LOC113532243 (LOC108279995)


Basic Information

Item Value
gene id LOC113532243
gene name LOC108279995
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15213936 ~ 15236310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923534.2
TCCCAGAGCCAGTGGTGTAACATTGTGTCTCCTGAATGCTCCGGACAATCTGTTTTCTGGAAGAGACAGTATTATCTTCCATAAGAGACTCAGCCATTCATCCAGAGAACGCAATCAGAAAGCATCACCcattaattgtttgtttgtttgtgcgcgtgtgtgtgtgtgtgtgtgaattgttcATTACTGCGGGGTCATGGGGGAACATGTTTGGTGCAAAGTCCCATTTAGAAACCTCAACTATCTTTATACACGTCTCCCTTACTCTGTCCATTCTGAAGAACCTGATCTTGAGTGCAGGCTAGCATGAGTGTGGAGAAGAAAGAACCCCGGCAGCCATGCTGCTCCAAACTAAAGATGTTTCTGGCCTCCTTGTCCTTTGTCTACTTTGCCAAAGCATTACAGGGCAGTTACATGAAAAGCTCAGTTACACAGATTGAGAGACGGTTTGACATTCCCAGCTCCCAAATTGGATTCATTGATGGAAGCTTTGAAATTGGCAACCTGTTGGTGATTGCATTTGTGAGTTATTTTGGAGCAAAACTTCACAGACCCAGACTGATTGGAATAGGATGTTTGATCATGGCTATTGGCTCCTTCATCACTGCCCTGCCTCACTTTTTCCAGGGACCGTACAAGTATGAGACAACAATCACACATTTCTCTGAGCCCAATGAGACTAAATCCATTTTCCCATGTCTTCCAACTGGGAGCCATTCACAAGAGGATGAATTTAGCACAGCTGAGAGTCAGACAGAGTGTGAGAAAACGGCAGGATCCTCTTTATGGATCTACGTGTTTCTGGGTAACATGCTACGAGGGATTGGAGAGACTCCAGTGATGCCTCTTGGACTGTCTTACATGGATGACTTTGCCAGAGAAGAAAACACAGCTTTCTACCTTGCATGTATACAGACTTTTGGTATCATGGGGCCTATGGTTGGCTTTATGCTGGGTTCCCTCTGTGCCAAAATCTATGTCGATATTGGAGCTGTGGACATAGACAGCATCtcaattaaccacaaagactCACGCTGGGTGGGAGCCTGGTGGCTTGGCTTCTTGGCTACTGGTGCTGTGATGTTACTGGCAGGAATCCCATTCTGGTTCCTGCCCAGGTCACTGCCTAAACAAGGAGAGGGCAATTCCAGGAAAAGCCAAGATGTCCATCAGAGCGAGCAAGATACTTGTATCCCTGTGGAGAGCAAAAACAGCCCACCATCTGAGAAAGCTGACCCGGTCAACATGGTTGCCATGGCCAAAGATTTCCTGCCATCTTTGAGGAGACTTTTCAGTAACCCTGTTTACGTGCTTATCATCTGCACCGGTTTGGTCCATGTCAACTGCTTTATTGGAATGATCACGTTTAAGCCCAAATACATGGAGCAGATTTATGGCCAATCTCCATCCAAGGGTATCTTAATGATAGGCATTATGAATGTGCCTGCTTTGGCCTTGGGGATCATCTTAGGAGGTGCGGTGATGAAAAAGTTCCAACTGAGCGTGCTTGGTGCAGCCAGAATAACCATTTCCACCTCTTTTCTCGCTTTTATTCTCATGCTGAGCCAGTACTTCCTGCACTGTGGAAATACACAGGTGGCAGGGCTCACTGTGTCCTATGAGGGCTTTCCAAATGTTTCCTCCCAGCAGCAGAGTTTGTTATCCCAGTGTAACTCAGGGTGCTCCTGCTCTCTAAAACACTGGGACCCAGTATGTGCCTACAATGGCCTGACATATTCCACACCCTGCCTTGCAGGCTGCCAGAGCTCCACTGGATTCGGCAAGGAGATGGTCTTTCACAACTGTTCATGTGTTGCTGAGGCACCGATGCCTAGTATGAACATGTCTGCTGTGTTGGGTCAGTGTCCACGTAAGGACAACTGTGACTACATGTTTAAGATTTACATGGCGGTGACTGTAATAGGGGCCTTTATCTCAGCCAGTGGAGCCACTCCTGCTTACATTGTTCTGCTCAGGTCTATCCAGCCAGACCTGAAGTCTCTGGCTCTTGGAATGCAGACGTTAATAGTCAGGACCCTGGgTGGAATCCCTCCTCCAATATATTTCGGAGCCTTGATTGACAGGACGTGTCTGAAGTGGGGAACAAAGCGATGCGGAGGCCGAGGTGCATGTCGACTCTACAATGCTGATGCTTTTAGAGTGACTTTCTTGGGCCTCATCTATGGCCTGTCCTCTCTGGCCCTTCTGCTGTGGGCGTTATTATTCAATAGACTATCACACCGCCAACGGCAGCTGGCACTGCAAAACCAGGCAAAAGCCACAGAGCCAGAAGCCAACAACATGGCCAGGGATAATGGAAATGCCTCGTTGGCTTTTGTGAAGTGCAAGGAAGAGCTGGATAGAGAGACCAGTATCTGAATTCTTGTGTGGCAAAAACAGACATGTTCTTTAAGCTCTAGTCATGCTGATTAAATGATGAATATCTTGTACAGTGTAGAGTTTGTGATGTGAGCTGTTCTGTGCTAGAAATTCTCTTACAAGTTGTATCCCAAGATTGGATTACTGTTGCATTACCTGGTCAGTAAAACAATCAGTATTcgtaaatgtgaaatatttagtGATATCTTttcatgtttgtatttgtattttaattgttttatagaGTTCAAGATTATAATGCAGTGAGAAGCGATTACAAGTGAATGAGTGGACTTTTACAGACAATACTTTTGACCTTAACCTTTATGttcttttatatgattttaaaattgcTATTAAACCACACAAAGAATATTATATATCACGAGCCAATAGAATAATAACCAGAAGTGACAAGAAAGGTGAGTGTTTAAATCCGTGTacttctaaaagaaaaaaatgtattaatgcctctatcattttattttcatgcttCAACTTACTATATTTGATAACTTCTGTAGTAAAACTATAATcaactgaaacagaaaaaaatgttggtcTGTTTAgctgagagattttttttccacaaggcTGGAGTTGGGcatacatacacctaggctaaagacattaaaactcaatttttcacaactccacagaATTCTTGTTACCATATGTGGTACCTGATGCGCAGAATACCTACATGTACTTTACTGTCTGACTACGCCACCCCCTAAAATGGGCGGGGGAAACCCCTTTTCTCTCTATAGTGTGGCTGATTCTAGACCCTGCCCGCAAAGAAACAGTTTACACAAGGCATGTACACAAGCtcaaatttattacaattttgaatAGGTACAATTGCTAATGTGAAAAAGAGACGAAGGGAAACTGGCTGGAGCTTCTCAAACTAATAAGGTCGGGTCGGCACGGCACCCACAGCTCCTCTCCTAGGAGGCcctggtgagagagagacaacaaaCCCAACACCATACAAGCATGCAACATAGCAACCACTGCACACACAAGGTCAGTAATTACCACTACAAAATACCACACCGTGTTGCATGTTACCAGTACACACCAAAATAGTGTCCCTTCAGTGCAGCCCCCAACTGAATGGAGCAGTAGTGAGGTGCAGATCCGGCCTTGTACAGAGAACCtatacagagacaaaaagaggagAACAGCCAGCTCCCAACACAATGACCACCGCGCTGGCTTGGTCAAGGCAGGGTTACACTAGACCAAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923534.2 True 3634 mRNA 0.45 15 15213936 15236310

Neighbor

gene id symbol gene type direction distance location
LOC113532053 LOC108279522 coding downstream 75459 15122734 ~ 15138477 (-)
LOC113531721 iapp coding downstream 95375 15116227 ~ 15118561 (-)
pyroxd1 pyroxd1,LOC108279593 coding downstream 102671 15101356 ~ 15111265 (-)
LOC113531968 LOC108279915,LOC107597036 coding downstream 135149 15059512 ~ 15078787 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding downstream 166465 15032648 ~ 15047471 (-)
LOC113532267 muc19,LOC108280038 coding upstream 232 15236542 ~ 15263393 (-)
LOC113532250 NA coding upstream 89063 15325373 ~ 15336933 (-)
alg10 alg10,LOC108427075 coding upstream 302747 15539057 ~ 15544883 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding upstream 317963 15554273 ~ 15563716 (-)
cerk cerk coding upstream 519996 15756306 ~ 15778944 (-)
LOC113532334 NA non-coding downstream 681 15209348 ~ 15213255 (-)
G282718 NA non-coding downstream 107941 14812922 ~ 15105995 (-)
G282673 NA non-coding downstream 474499 14739216 ~ 14739437 (-)
G282649 NA non-coding downstream 482932 14715045 ~ 14731004 (-)
G282410 NA non-coding downstream 823379 14389823 ~ 14390557 (-)
G282950 NA non-coding upstream 34684 15270994 ~ 15271200 (-)
G282999 NA non-coding upstream 114396 15350706 ~ 15353441 (-)
G283022 NA non-coding upstream 151638 15387948 ~ 15390101 (-)
G283081 NA non-coding upstream 280914 15517224 ~ 15521690 (-)
G283218 NA non-coding upstream 518007 15754317 ~ 15754605 (-)
LOC113531972 muc19,LOC108280038 other downstream 29861 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 3461023 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3553609 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3625912 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 3954524 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 1164611 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1602225 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1722202 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2742453 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2791424 18027734 ~ 18067585 (-)

Expression


Co-expression Network