gnsa (gns,gnsa,LOC107658926,LOC107656403)


Basic Information

Item Value
gene id gnsa
gene name gns,gnsa,LOC107658926,LOC107656403
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17795884 ~ 17809289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923555.2
TCAAGAGCACGTGACTGTGAAACTAGGGAAGTATCTTAAGAGCGCTGATCGGCTTCTCATTGGGaatctagtgcactacgtagggtgtAGTAAAGATTTATTTCACGCCCTCATTAGTGTACTTCAGCAgggaataggaagccatttgagaTGGAATAACAGCTAAGGATTTTTAAGTAGCCCTTGCAGTGGGacagtgttgtttttaatgcagtttcactttttttagttcaataaagtatttttttgaaTAGCTTGGTGTTTTAATTTAGCAGCAAACATGGCCGCGATTATTCGATTATGGCTCCATACAACATCCCAGCATTTGAGTGTAATTTGGGTCGCTTTGCTGTTGAGCAGTCTGGCTGTGATGACCAAAACATACCACAGACCAAACATCGTGCTGATTCTCACTGATGATCTGGACATCTCCATCGGCGGGATGATTCCCTTAAACAAAACAAGGAAGTTGATTGGGGATGCTGGAATAACCTTCACAAACACGTTTGTTGCCAGTCCCCTGTGCTGCCCCAGCAGAGCCAGCATACTGACAGGCAAATACCCACACAACCACCGTGTGATCAACAACACACTGGAAGGCAACTGCAGCAGTCCCGGCTGGCAGAAGAGCCAGGAGCCTTATACTTTCCCAGTCATACTGCAGAAATATGGCTACTACCAGACATTCTTTGCTGGGAAGTACATGAACGAGTATGGAAACAAGCAGGCTGGAGGAGTCGAGTATGTTCCCCCAGGCTGGGACTACTGGTTTGCACTGGAGAGAAACTCAAAGTATTACAACTACACATTGTCAGTAAACGGTAAAGCACAGAGGCATGGAGAGAATTATACTGAGGACTATCTTACTGACGTTCTGGCCAACATATCACTAGACTTTCTCCAGTACAAGTCTAACTACAGGCCATTTTTCATGATGGTGTCCACGCCAGCTCCTCACTCTCCCTGGACAGCTGCACCTCAGTACGAGGGCCAGTTTTCCAACATCAAAGCCCCAAGAGATCCCAGTTTTAACACCCACAGCAAGGATAAACACTGGCTAATTCGACAGGCAAAGACTCCAATGGCAAACTCCTCTGTGGAATTCCTTGACAATGCTTACAGAAAACGGTGGCGTACTCTCTTGTCTGTAGACGACCTGGTGGAGAAGGTGGTGAAGAAACTGGAAGTCCGAGGAGAGCTGGAGAACACGTATATCTTTTTCACCTCTGATAATGGCTACCACACTGgccaGTTTTCTCTCCCCATGGACAAGCGTCAGCTTTATGAGTTTGACATCAAAGTTCCTCTGCTGGTACGAGGACCAAACATCAAGCCCAACCAGACCAGCCCATTACTTGTAGCTAATATAGATTTGGGTCCAACTATCCTGGACATGGCAGGTTATGATGTCAATAAGACCCAGATGGACGGGATGTCCTTTCTGCCAGTTATGATTGGGAAGGagaacagcacaacatggaggACTGACTTTCTGGTGGAGTATGAGGGAGAAGGACACAATGTCTCAGATCCAGCTTGTCCCAGCCTGGGCCCAGGAGTCTCAGAGTGTTTTCCTGATTGTGTATGTGAAGATGCATATAACAATACATATGCTTGCGTTCGCACAGTCTCCCAGACTACCAACCTGCAGTACTGCGAGTTTGATGATAATGAGGTGTTTGTGGAAGTGTACAACCTGACAGCGGACCCCTTCCAGCTCACAAACATTGCCAAAAGCATCGATCAGGAGGTTCTGGAGAAAATGAATCATCGATTGATGATGCTGCAGTCATGTTCAGGACAGTCCTGCAGGACACCCGGGGTCTACGATTCACGGTTTAAATTCGACCCTCGGATGATGTTCAGCAGTCTCAGTCCTCACATAAGCCGACTGCGGCAGAAGCTAAAGTAAAGACAGAAAGCAAGAATTTGAAAACCCTGTCCTGCTGTTGCCTTTTGTCCTGATCTTCCCTTTGAGATCGTGGCTGTCTCTTCCGTGTCTGGTCTAAAGAATAAGGTCATGAGGGTTTATTGAAACAGGACACTACCCTGCTGCAGCCACccttttctgtatttctgtagtTTCTGACAGCTGCAATTTTAACATAGACTGACTATATTCAGTATTGAGTTTTGctcagattacattttttttcctgccttttgttaatttgtttttgcATCCTGAGATTAACAACTTAAGTGAgttagaatagagtagaatagcaGGGATAAAATGTTGGCAGTGTTTATCAGTGGGGTTTTGtctacacataaaaaaaatcattaatattttttgtattatctAGGCACCAGAGCTCTTATATTCTATCAGATTTTAGGCCTTAAATTTTGCCACAGTGACATTAACATGTTTGACATTAACCTTGTTTGGACATTTTAGTGTTGTACTTGGTCAAAGCCAAAGTTTGAATAACTGAATGTATTCTGTTTCAGAAAGCAAGGTGCCTAATTCTGACCAGTGACcactgttttttattaaaacatgcaaATTTCATGATTTCTCACACCTACTGATCATGGGGGACTCATACGAATCTACAAGATTCATGAATGCACAACTGATGGCTGTGGAAAACAGTTTCAGTTCAGTTGTGAATGAGCCAAAGGGATTACAGTACTCTAGTTAGGTCATTAATAACTATTTAATGtgaattgttctttttttagtgCAAGAAATGATATTTTACTATATGAGGGCGTATAAAGGATATGAGACACCGTGTTGCTCTGCTAAAAAACAGCAGTAAGCAACAGCAGCCTCACTAATGAGGGAACACTTTCCACTTTGTACTGCTATATGTTGGATAATCAAATGTGTTGATATAGAAATATTACTAATGATTTGGTGTTTTGTTCCCATTTATTTGAGTGAAAATGCAGTAGGAATAGTTCATGTTAAATGCTTGCATTCATGAAATAACTTCTCATCACTGGAGTCATTATTCCGTTCCGTACTGAGGCACTTTCTGATCTGTGATGAAAAAggttcatgtttaattttgcaCAAAATTTCTTTCCGAGTCATTTTCCTGTAGTTCATGTGTATTTTTTCTGGCTGAGTTTGATCAATAAACAATTATGAACTcgc

Function

symbol description
gnsa Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Predicted to act upstream of or within glycosaminoglycan metabolic process. Predicted to be located in lysosome. Human ortholog(s) of this gene implicated in mucopolysaccharidosis III and mucopolysaccharidosis type IIID. Orthologous to human GNS (glucosamine (N-acetyl)-6-sulfatase).
gns Enables sulfuric ester hydrolase activity. Predicted to be involved in keratan sulfate catabolic process. Located in extracellular exosome. Implicated in mucopolysaccharidosis III and mucopolysaccharidosis type IIID.

NR:

description
PREDICTED: N-acetylglucosamine-6-sulfatase

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function

KEGG:

id description
K01137 GNS; N-acetylglucosamine-6-sulfatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923555.2 True 3112 mRNA 0.42 14 17795884 17809289

Neighbor

gene id symbol gene type direction distance location
LOC113531978 LOC108279914 coding downstream 179635 17611890 ~ 17616249 (-)
ckap4 ckap4 coding downstream 201567 17591120 ~ 17594317 (-)
LOC113531974 LOC108279712 coding downstream 289387 17498388 ~ 17506497 (-)
LOC117599443 LOC108279803 coding downstream 301097 17486811 ~ 17494787 (-)
LOC117599538 LOC108279803 coding downstream 310463 17484558 ~ 17485421 (-)
ano2b LOC108279462,LOC108425378 coding upstream 98339 17907628 ~ 17971244 (-)
strip2 strip2,LOC107656389 coding upstream 181340 17990629 ~ 18023472 (-)
slc5a8 LOC108279688 coding upstream 288338 18097627 ~ 18106446 (-)
arl1 arl1 coding upstream 328506 18137795 ~ 18141774 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding upstream 336583 18145872 ~ 18156560 (-)
G284295 NA non-coding downstream 5121 17790534 ~ 17790763 (-)
G284294 NA non-coding downstream 30955 17762031 ~ 17764929 (-)
G284273 NA non-coding downstream 77646 17717905 ~ 17718238 (-)
G284165 NA non-coding downstream 200985 17594653 ~ 17594899 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding downstream 230929 17558407 ~ 17564955 (-)
G284323 NA non-coding upstream 41168 17850457 ~ 17850894 (-)
G284349 NA non-coding upstream 86046 17895335 ~ 17898230 (-)
G284352 NA non-coding upstream 91736 17901025 ~ 17901267 (-)
G284520 NA non-coding upstream 279365 18088654 ~ 18088942 (-)
G284559 NA non-coding upstream 371090 18180379 ~ 18184992 (-)
phf21b phf21b other downstream 768019 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 942489 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1389021 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2611809 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 6042971 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 169474 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 218445 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 259309 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 273949 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 274494 18083783 ~ 18083854 (-)

Expression


Co-expression Network