si:ch211-214j24.10 (LOC108279797)


Basic Information

Item Value
gene id si:ch211-214j24.10
gene name LOC108279797
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12445898 ~ 12451585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923619.2
CCGCCCCTCTTCGCGCCTCCAAATGCGGAACTTGCTCTAAACTGCTTCCACCCGGTCAGAGTGAGCCTCCACGCCAAACAACACACCAACACGCCGCAAATAATCCTCTTACGCACTTCACCAACCGGAGATTTAACCCATCGACATGCATATTAAAACAGGTACCTGGGAGTCAAATAATGCTGTGTGCGAGTCTGACACGTTGTGTGACCCTGCCGTCCTCGTCGCTCCTCCCCAAGCTGAGCCACACATCCGGAACCGGCGGCTTTCCCCTGGCTCTGGCAGCTGTGGCGGAGGTGGAGGTGGCTGTGCCGCCAGAGTGGACACACTTTCCCCCCATCAGACATCAAACAGCCCTCATCATGAAGGATCTTCACATGGAACTGTTCACACACAATCCTTGAACAGGGAGCACAGGGCTCAGAACAGGGGCAGAGGCCCTCGGCGTGAGGGAGCCAGTCAAAAACTCCATAAATCCTCTCAGGCACAGAAGGAGAGGTGGATGGGAGAAACCTTGTCATCGCTCAGACCTCCTCCCGCCTTCCCGGTGAAGGACAGCCCTGCCAAGCTGCAGCCAGCGGTCAGTTATGCCTCCAAGGTGAAGGCGGGCGGATACTCTGGGGGCGTGGCTGAAGAGCCACCTGGCATCGGGGCACTTCTGCAGAATCAGTGGGGACTCAGCTTCATTACTGATGGTCCAGTGATGGAGAACTCCGCTTCAGTCGCTGAAGAGGTTACAGAGCAGAGTCCACCTGTGATTGTTCATCACGTTGCTGGAGAAATGGTTTCAGAAAACTCAGCGGCTTTGCCGAGCCAGTGCTCAAAGGAGCCTGAGGATTCTGCACAGCTGCTGCTCACCTGTCGCCATCTAATGGAAGCCGCGCAGTATCATACACAAGaatGGAGTGCAGTCTTCAGGAAACAAAAAGAAGATCCTGTGAAGGTCGTCTGGTACACGGACTCGTCATAGCAGCTTGCACAGCACACTTCGGCTAATTCATCCTCACACACTCGTACTCCACGCACCTTTATATTCTCTCTAGCACACTTacaattacacacagacacacatccaGTCTTTGCACTCATCTTCACTCCAAATTCCCCTTCCCCACATGAAGAAAGAAATGTCTCCGATGCATGGATGCCTTAAAACTTAACATGGCGTGGAGACCTTTCCACACATCCTTTATTTTATCATGGTGGAGAACACTGTTTACTTTTTATAGAATATCTTTATAAAGATCTGGCAATTTTATTGTAAGGGGCAAAACTTTACTTTAATGTAGCTTTTTAGCCCCACTGTTTTGCTCTTTCTCCCCCATTATAAAGTGTTTCTGTACTCACAGTGAAGACCTCCATCTCTCTGGAACCTCTGTAATTTTAGAAGTCTTCTTATTTTTGTGTTTACGTCCCATACCTATCATGTGTGTACCTTACATGGGTGGCATTTACATGGGCACAGCTGACATGCTTTGTCAGCATCAGTGCTCTAATTTCCGTTCTTAgtgctgtttttaaaatatttccaccCTAACttgaatgtaaaatgtacaataGAGATCTTTTTAAAGGGGCACTGGAAGAGATTTAAGTGAAGTGTTGCAGAATAAAAGCAAAGTATAAAACCATTGTCTATTTTTTATTACTACGTGCAGAGAAATGTACTTAccgaaaaaaaaagggggggaaacTCAGGTTATCTTGCTACCTTTGGTTTTGAACCTTGTGTTTACtaaaatttgattaaaattgTTTACAGTTACTTCAATTTTAGAATTTCCGGTTCTTTTTTTCAAGTATGTTGGTGTTGAAGTTGGCATTTTAAGTGGGCAGTCACCTTTtcagcaaacaaaaaaacattttattaaaatgtagaaGTGACGAGTTCTGTACATGGCTCTGTAATCTCTAATATGTGTTTTGTTAAAGCTATTGGAtgtaaaacagcatttttagaAATGCTAGAACCTGGTGTCTAGGCTTGTCTTGGCTTTTTGCAGCTTAACTTTCCAGTGTCACTTTACATTTCTACACATACGGTCATTGAATCATGGGTAAAATTCTGTTGTGTATTGTTTTCTAAAGTATGACGCCAGGCAGACGACTGTTGGCTTTGTTTTATGTAGATATGTGAGATGTTCTCAAATGTATCTGTTTAGATACTAAATCCAATTGTTCAATAACAATAATCTTCAAAGCAACAAGTTTTCCCTAAGGTCTAAAGTTGAATACGATCAAACCACACCtctaaaatgttttgatttGGTTATTTGTTGATGACTTAATAGGGAAGAAAATAAACTCAGGAACTACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103357125

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923619.2 True 2317 mRNA 0.44 4 12445898 12451585

Neighbor

gene id symbol gene type direction distance location
apex1 apex1,LOC107658891 coding downstream 10707 12430448 ~ 12435191 (-)
LOC113532240 NA coding downstream 30824 12411859 ~ 12415074 (-)
LOC113531803 NA coding downstream 36368 12402179 ~ 12409530 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding downstream 51377 12375791 ~ 12394521 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding downstream 71514 12369609 ~ 12374384 (-)
shisal1a LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751 coding upstream 36810 12488395 ~ 12517683 (-)
cmasa NA coding upstream 118483 12570068 ~ 12579954 (-)
LOC113532438 NA coding upstream 129338 12580923 ~ 12581063 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding upstream 133252 12584837 ~ 12588680 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding upstream 140502 12592087 ~ 12636416 (-)
G281486 NA non-coding downstream 76633 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 191743 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 351839 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 409536 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 734914 11707690 ~ 11710984 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 5978 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 24679 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 694697 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 717090 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 807567 13259152 ~ 13285718 (-)
dusp16 dusp16 other downstream 692985 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 785571 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 857874 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1186486 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1351722 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2688340 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3949336 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4386950 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4506927 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5527178 17978763 ~ 17988280 (-)

Expression


Co-expression Network