LOC113532299 (LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517)


Basic Information

Item Value
gene id LOC113532299
gene name LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17119346 ~ 17193239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923621.2
AGAGCCGGATCCCAAGCTTTCTCCAGGTTTTAGTGGAAGCGGCCCGGAGGGAGGGAAAGGAGACAAGGATGTTCAGTTAGCAGGACTGGAGCAATCTGCCTAGTAGTGAAAGATCAGTGGAAGGCAACGCAAAATTAGTGCAATCGAGGATTATTTTGCATGCGGCTCGTGGATGATGAGTGGTGCTATTCCCCAAGCCTGCTTTTTGATGCCAAACTCGAAGATAGCGCATTGTTTACAATGACAGTGCCATGCACTACCTGGTGAACATCTACTGCCTACACAGAGGTCTCTCAGCCTCCTGATCGCCCCCTCTCTGGCTCCAGAGGATGCTGGGAATGTGTCGTGGGCGCAGGAAGTTCCTGGCTGCATCCGTCGCCTTGCTTTTTATTCCAGGCCTCACCTGGCTATATCTGTCGAACGTCACAGTGAAGCCACTGCCTCTCTCCCCACTGGAGCCTCAATCCTCCACACTGGCCCTGGAGCTTCGGGTTCGAGAGGTAGAGGAGGAAAACCGAGCGCTCAGAAGAGAGATTAGCCAGCTGCCCAGGAGTCCTACCCACGGCAACCAGCATTCCCATCACCACAGCAGCGTACACCATGGCAACCAGTCCCAGCTTCACTCCACTGAAGAGGGTACCGGTGATAGTGAAGCTCAGAAAGCACTCTCTAAAGTCAACGGCTCCAGCTGTGTCCAGCAACCTGCTGTGGATAAATGTGAGACCATTCATGTTGCCATCGTGTGCGCGGGGTACAACGCAAGCCGAGATGTGGTGACGCTGGTCAAGTCTGTGCTTTTTCACCGtcGGAACCCTCTTCACTTCCACTTCATCACAGACTCCATCGCCAAGCAGATCCTAGCGTCCCTCTTCCACACTTGGATGGTGCCAGCTGTCCGAGTGGACTTTTACGATGCAGATGAATTGAAGtcTGAGGTGTCATGGATCCCCAACAAACATTACTCAGGTATCTACGGCCTGATGAAGCTGGTTCTGACCAAGACGCTGCCATCAGACCTGCAGAAAGTCATCGTTCTAGATACCGACATCACCTTTGCCACAGACATCGCTGAGCTGTGGGCTGTCTTTCACAAATTCAAAGgtcAGCAGGTGCTTGGGCTGGTGGAGAATCAGAGTGACTGGTATTTGGGGAACCTGTGGAAGAACCATCGACCGTGGCCTGCTCTAGGTCGAGGCTTCAACACTGgtgtgatTCTCCTGCTGTTAGATCGTTTGAGGAAGCTCAGATGGGAGCAGATGTGGAGActgacagcagagagagagctgaTGAGCATGCTGTCTACATCGCTAGCagatcagGACATCTTTAACGCTGTGATCAAACAGAACCCCTTCCTGGTGCACCAGCTGCCCTGCTTCTGGAATGTCCAGCTGTCTGATCACACACGCTCGGAGAAGTGCTATAGAGATGTGTCCGACCTCAAGGTGATCCACTGGAACTCGCCTAAAAAGCTGCGGGTGAAGAACAAGCATGTGGAGTTTTTTAGGAACCTTTATCTGACCTTCCTGGAGTATGATGGCAATCTGCTGAGGAGGGAGCTCTTTGGCTGTCCAAGTGAAACTGACCACAATAGTGAGAACCTCCAGAAGACTCTACTGGAGCTTGATGAGGACGATCCGTGTTATGAGTTCAGACGAGAGCGTTTCACTGTGCATCGCACACACCTCTACTTCCTGCACTATGAGTATGAGCCCAGCGCAGACCAGACTGATGTTACGCTCGTGGCCCAGCTCTCCATGGACAGGCTGCAGATGCTAGAGGCCATCTGTAAACACTGGGAAGGACCCATCAGTCTGGCTCTCTACCTGTCTGACGCTGAGGCACAGCAATTCCTGCGCTATGCCCAGGGCTCTGAGGTGCTCATGAGCAGAAGCAACGTGGGATACCATATTGTCTACAAAGAGGGCCAGTTCTACCCCGTCAACCTGCTGCGCAACGTTGCCATGAAACAAGTCAACACACCCTACATGTTCCTGTCTGACATTGACTTCCTGCCCATGTACGGACTCTACGAATACCTCAGGAAGTCTGTAGTACAGCTGGACATGGCGCACACTAAAAAGGCTCTGGTGGTGCCTGCATTTGAGACGCTGCGTTACCGGCTGTCCTTTCCCAAATCCAAGGCTGAGCTTCTGTCCCAGCTGGACATGGGCACTCTCTTCACCTTCAGGTATCATGTGTGGACAAAAGGTCACGCTCCAACTAACTTTGCAAAATGGCGGACAGCCACAACGCCATACAGAGTGCAGTGGGAGGCCGACTTTGAACCTTATGTGATGGTGAGGAGGGACAGTCCAGAATATGACCGCAGGTTTGTGGGATTCGGTTGGAACAAAGTGGCCCACATTATGGAGCTGGATGCACAGGAATATGAGTTTGTGGTTCTGCCCAATGCCTATATGATCCACATGCCTCATGCGCCCAGCTTCGACATCACCAAGTTCCGCTCCAATAAACAATACCGCGCTTGCCTCAAGACTCTCAAAGAAGAGTTTCAGCAGAACATGTCACGCCGCTATGGATTTGCTGCCCTCAAATACATGACGGCAGACAACAACAGCTAGCAAAGTCACCTTtatgtttttcacttttcaggTGGTTCCATTAGATATCACATAGGAAAGCAGTGCAATGGGTCTGTAATGGACCCAACAACGTGATAATGGACCCTCAGTGTAAGTCAGAGGAGTGTGTTCTTCCATTCTATCATTCAGGAAGATGCCATGGTGACCATTTTTTCACTGCTTTGGAAACAGCAATAGTGCAGTGTGTCAGCTATTGGATGTCACGGCATTCTTCTGGACGAATTCAGTCCACCCAGCTTCCCAGATTGACCTGCTCTATGAACAGGAATTGAGACGTTATTAACCATTGGGAAAGCAGAAAATTTTAATTGAACATGACTGAATATGACCAGAGGAAATGCCACTGCAGAGACTGAGCTGTGGTTTGTTGGACTATAATCTACTGATGCCTAGAAGCtgaatttagcatttttgtgtgtgctttcaGTCATAGGGCGATGTTTAGCTGTACTGGATCTCAGACTAATGACACATTAGCTCTTAGACTAAGCAACATAGAGACACAGAAAGGGATCCCCAGTCATTTTTGTAAGGAAAGTGATCACTGTAGAGATAAGgttgattaataattaataatatgatGTTTACATCTTTTACAGAATAAAcagtgttgtttaaaaaaaaaaaaaaaagaaaaaaagctaaatgtCTTAGATTTTATAGCACCTTTGTGGAATCACTTTTCCTATTAGAGCTCAGTAAGGACCCAGGTGGGCTAAAGGTTGCACCCAATACGTAGTAACTGTTCTGTTTATGGACAACGTCAGGCTATCAGCATTGACAATCCAGACACAGACAAAAGCCCCAAATCATGTATATGTAAATCTGAGTcacttttttcagcattttactgtatgttttcatATTTCTGTGCTCACTATGATATCAATGTTTTGGTGTCATTGTTCTATGTaagtattacatttacatttcttgcAGCTAACAGAAATGCACTAACTCCAAGGTTAAAAGCTGacggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggggatGTACAAATAATTGTGCACCATTTGCCAGGGTTagtttgcactttttttcctctaacCCTAAGATGAAGGTCTGGGTATCTCATAATGTGATGTGGAAATTCCTTCATTTATGTTGtgtttgaatgaaagaaaaCTTAATTCACACAACCACAAATCTGATAAATCAAGAATAATAATGGGATTGACCATGAAAATGGACATTTGTATTGATGGACAAATCCTAGTCCCATGTATATGGGCATGGAATTTTGCTGACATCTTCAGCAGCTGTTGAATCCTCTTACTGGTTTACAGATCACTTGTATATATGTACCTTGTAGAAACAGTGAAATGGTTCCACACGGATGActttttcactgttgatctgctgctcaaagTTTTTGAACGCAACTGTGCTAACGGCAGcaggaaaggaaaacaaaaaaaggaaacaaattgcatttttaatttctaatttcaaaattaccattaacattatttgtacaGTGTTCGATTTGATACTTCATTGTAGATCTGTTTAATCTCTTTTGTTTTAGGTCAAGATTTCCAggcttttttgtcttttggtgaAAGCAAAAGcacgtttttttgtttgtttgtttgtttgtttgttttgactgTATTCGGCCAGAATTTTTGGTGGCCAAAATGTTggtgcatccctaataaatatagttaacttcAGTTAACTATATACTTGTTTAATATACTTGCTAAGTCAAATTGCTCTTTGTGTACCTTGACACAGAGAAAGCAAGGATGCCATGTCAATCAAGTTGAGACGACAGCGGCACCCGTCTCTGGGCGGAGACGAATTCtctttggcatatttttgagtgcTGCGTAGTACTAGtatactctgatgttaaaatgcagagctcctacacaaaatgtgtgaaaGTTGGCAGGTCTGAACTACTAGCATGGCTGCTGAAAAGGTAatcaaacatactgtatgtttacttCAGTTTTTAATGCGTGCAGACAgggtttgagtgtgtgtgtgtgtgtgtgtgagaatgtgtaaGTGTGGCTAAACTGATGTGTCCAAGACTGACAGATTTTCTGCtacctgaataaaaaaaaattgtggaaaaGAA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K09668 LARGE; glycosyltransferase-like protein LARGE

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923621.2 True 4725 mRNA 0.46 15 17119346 17193239

Neighbor

gene id symbol gene type direction distance location
trnar-ccg_5 NA coding downstream 15709 17103565 ~ 17103637 (-)
kiaa0930 kiaa0930,zgc:172139 coding downstream 20017 17062768 ~ 17099329 (-)
kcna1b kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 301926 16815760 ~ 16817420 (-)
LOC113532119 LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172 coding downstream 347651 16769270 ~ 16771695 (-)
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding downstream 419890 16688373 ~ 16699456 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding upstream 68451 17261690 ~ 17316582 (-)
sapcd1 LOC108280126 coding upstream 241203 17434442 ~ 17439078 (-)
slc37a3 slc37a3,LOC107562143,LOC107758206,LOC107601005,LOC106609230 coding upstream 269716 17462955 ~ 17480834 (-)
LOC117599538 LOC108279803 coding upstream 291319 17484558 ~ 17485421 (-)
LOC117599443 LOC108279803 coding upstream 293572 17486811 ~ 17494787 (-)
G284003 NA non-coding downstream 76066 17041627 ~ 17043280 (-)
LOC117599589 NA non-coding downstream 499628 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 669580 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 823156 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 879445 16239515 ~ 16239901 (-)
G284131 NA non-coding upstream 313637 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 320371 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 328187 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 355093 17548332 ~ 17553258 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding upstream 365168 17558407 ~ 17564955 (-)
phf21b phf21b other downstream 91481 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 265951 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 712483 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1935271 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5366433 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 785524 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 834495 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 875359 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 889999 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 890544 18083783 ~ 18083854 (-)

Expression


Co-expression Network