tspan9b (tsn9,LOC108428166,LOC107658833,LOC107580843,LOC107656293,LOC107725884,LOC103041281)


Basic Information

Item Value
gene id tspan9b
gene name tsn9,LOC108428166,LOC107658833,LOC107580843,LOC107656293,LOC107725884,LOC103041281
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8358310 ~ 8388357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923665.2
GTGATCATAAGAGTTTGAGATCAGTCGAGGCTTATTTGCATTTCTATGACCTGAATTTTTACAACCATATGAACATGAGAAGCTGAATTTCTATGGAATAGATTTTTGAGGAGGGACCACTCACACTCCTGTTAGCAGATCCATGAGAggaggcgagagagagagagaaagagagagagagagagtagagcaGAGCACATTCAGATGCAGAGAGCGAGGTGAGGACGGTGCATTAGTTGTGCAGAGGAGAGCCGAGGGAGCACACTGAGAAGTGAAAAGCAGATCATTTCTAcgagagaagaaaggaaagatgCTCTATAGCTGCTTTTTTGGAGAATAAGAGTAGGAGGATGCAGGGCTGTTGATTGGGCGCTTCAGACCGAGTGTAACTTATGAGATTTCCAGGATGTCTTTTGGAGTGTATGGAGCAATTTGACGCTATGCACTGCGTCTTCTACATGATGCATGCGTGAGAGTTTGATTCACGATGGAGCGCTGTGAGAGCAGCGTGGCCGTGGCCGTCCAGCCGAGTCCGTCATTGGACAGCGCCGAGCTGGAGTTCGCCCAGGCTGTCCGCCGCGGACACCGCCTCGCTGTGGGCGCTTTCTACGGCTCCCGTCGCTCGAAGGTTCAGACTCAGACAAGTCCCGAGGAGAGCATAGAGGGCACGGCGGCTGTGGGCGAGAAGCCAGCGAGGCAGAGTGGGGCATGTGGAGGGAAGTTTCTTGTTTTTTACCTGGActtgtcttttgttttcttgttagaGCTGGAGAAGCTGAGGATGGCGCGCGGGTGCCTGTGCTGTGTCAAATACATGATGTTCCTCTTCAACCTGCTCTTCTGGctGTCAGGCTGTGGTCTGCTGGGAGTAGGGATCTGGCTCTCCATGTCTCAGGGGAGCTTTGccactttctctccctccttccccTCGCTCTCAGCCGCCAATCTGGTAATCATCCTGGGCTCCATCGTCATGGTGACGGGCTTCCTGGGCTGCATGGGCGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTtTCTTCATTGTCCTGTTGATAATTCTGCTGGCAGAGTTGATTCTGCTCATCCTCTTCTTTGTGTATACAGACAAGGTGAGTCAGAATGCACAGCAGGACCTGAAGGAGGGTCTGCAACTGTACAACACTGACAACAACATCGGCCTGCGCAATGCATGGAACATCATCCagtctgagtggcaGTGCTGTGGCGTAACTGGGCACACAGACTGGCACGATGCCCTGCCTGACAAGACAGTCCCAGACCGATGTTGTCAGGAGCATTATAAAGAGTGTGGGCGCAATGCAAGTAATGTCTTCTGGTCTCAGGGCTGCTACGAGAAGGTTGTGGACTGGCTGGATGATAACAAACACCTGTTGGGCACTATTGCTATGTGTGTGCTGGTCAtacagCTCCTCGGCATGGCGTTTTCCATGACCCTGTACCAGCAGATTCACAGAGCGGGGAAGAAGTACAGTGCCTAAAGGAAAGGACTTAAACCTCATTAACAAAAAATCAACAGCAGCCCAAAAACCTTTAGTCCATACTGCTTCCTGTGTCTTTCCATTTCTGGACATTACCAAGAATTATAGACTATGTGTCTATACATTAAATCCAGTAAGATTTTGTAGTGtatatgtgaaaatatatttccaAACCCATGTTAAGGAATTGTTATAGGCAGAAATAATATTTAGATGGAAGCAGAGGCAAATGAAATTTTTTGGAGAAGAAATTTTGGCACCTCTTGTATAGCAGGATTAATAAGCCACCATGGTTCCGCTGTTTGTATAATGCATTCCCTCATCGAGGAAAAGATTAGTACTCACTGCTGAAGACTGCCTATTTGTACAATAATGtaccttctctttctctcacttgcTCTCACACATGTACATTGTTTCTcatatattgattataaaagCATGTAACGCAGATCTCTTTCAGGAGCTAACTGTACATTGTTCACTTGCCCTGTTTATCCTATAAATAGATGAATATAATCCTGTTTATCATGCCggttgtatgtgtgtatgtgtgtacattcTGTGTGGGCAGAGAAAAGTTTTCCACCAAACTAACATGTTGCCTTTGGGCCACTGTGGATCAGTTTACTCTTTCCTTTttgctgtctttttctgtctggtTCTTTTGTTCTAATGTTCACTGATCTTTTCAAAGTTCCACCTCCCCAGCCGAGGTGAATGAGCCATCCCAGTGCAGATTATGAGATTCAGAGAGAGAACGATAAGCGCAGAGATCAATAAAGGACTAGCATCAGAAGAACAAACAGAACAGCACTTCAAAGTCTGGTTTTGGAAATAGTCCACGTTTATAAAGCTTTTACACATTGAGccataaatttttttaatattttccaacTGTCCCTCGTGTGCTTGTGATTGTTTTAAGTGTGATTTATTCGATATTATAATCAAGTCACGATCTAATATATTCAAACTccc
>XM_026923666.2
GTGACCGCCTCTTTCCATCTTTTCCAACCTCCTCTGTTTCCGCTTTTGTTGTgcgagaagaaaaaaatggacacCAGTTGAGTTACAAGTTTAcaagggtttgtttttagctttCACCATCGACTAATcaagcttttgtttgtttgtttgtttgtttgtgtgcgcgcgcgtgtgggACATGAGGCAGGGAGTTCCATCAGAGctcaaagagagaaagagttaaAAACTAACTCACCAAGTTATCCTCGCAGTCCTCCTCACAGCTGGAAAACAGAAAGCCTGGtctggttttttattttttatttttaggaagACTGCAGTAAGaGCTGGAGAAGCTGAGGATGGCGCGCGGGTGCCTGTGCTGTGTCAAATACATGATGTTCCTCTTCAACCTGCTCTTCTGGctGTCAGGCTGTGGTCTGCTGGGAGTAGGGATCTGGCTCTCCATGTCTCAGGGGAGCTTTGccactttctctccctccttccccTCGCTCTCAGCCGCCAATCTGGTAATCATCCTGGGCTCCATCGTCATGGTGACGGGCTTCCTGGGCTGCATGGGCGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTtTCTTCATTGTCCTGTTGATAATTCTGCTGGCAGAGTTGATTCTGCTCATCCTCTTCTTTGTGTATACAGACAAGGTGAGTCAGAATGCACAGCAGGACCTGAAGGAGGGTCTGCAACTGTACAACACTGACAACAACATCGGCCTGCGCAATGCATGGAACATCATCCagtctgagtggcaGTGCTGTGGCGTAACTGGGCACACAGACTGGCACGATGCCCTGCCTGACAAGACAGTCCCAGACCGATGTTGTCAGGAGCATTATAAAGAGTGTGGGCGCAATGCAAGTAATGTCTTCTGGTCTCAGGGCTGCTACGAGAAGGTTGTGGACTGGCTGGATGATAACAAACACCTGTTGGGCACTATTGCTATGTGTGTGCTGGTCAtacagCTCCTCGGCATGGCGTTTTCCATGACCCTGTACCAGCAGATTCACAGAGCGGGGAAGAAGTACAGTGCCTAAAGGAAAGGACTTAAACCTCATTAACAAAAAATCAACAGCAGCCCAAAAACCTTTAGTCCATACTGCTTCCTGTGTCTTTCCATTTCTGGACATTACCAAGAATTATAGACTATGTGTCTATACATTAAATCCAGTAAGATTTTGTAGTGtatatgtgaaaatatatttccaAACCCATGTTAAGGAATTGTTATAGGCAGAAATAATATTTAGATGGAAGCAGAGGCAAATGAAATTTTTTGGAGAAGAAATTTTGGCACCTCTTGTATAGCAGGATTAATAAGCCACCATGGTTCCGCTGTTTGTATAATGCATTCCCTCATCGAGGAAAAGATTAGTACTCACTGCTGAAGACTGCCTATTTGTACAATAATGtaccttctctttctctcacttgcTCTCACACATGTACATTGTTTCTcatatattgattataaaagCATGTAACGCAGATCTCTTTCAGGAGCTAACTGTACATTGTTCACTTGCCCTGTTTATCCTATAAATAGATGAATATAATCCTGTTTATCATGCCggttgtatgtgtgtatgtgtgtacattcTGTGTGGGCAGAGAAAAGTTTTCCACCAAACTAACATGTTGCCTTTGGGCCACTGTGGATCAGTTTACTCTTTCCTTTttgctgtctttttctgtctggtTCTTTTGTTCTAATGTTCACTGATCTTTTCAAAGTTCCACCTCCCCAGCCGAGGTGAATGAGCCATCCCAGTGCAGATTATGAGATTCAGAGAGAGAACGATAAGCGCAGAGATCAATAAAGGACTAGCATCAGAAGAACAAACAGAACAGCACTTCAAAGTCTGGTTTTGGAAATAGTCCACGTTTATAAAGCTTTTACACATTGAGccataaatttttttaatattttccaacTGTCCCTCGTGTGCTTGTGATTGTTTTAAGTGTGATTTATTCGATATTATAATCAAGTCACGATCTAATATATTCAAACTccc

Function

NR:

description
PREDICTED: tetraspanin-9 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923665.2 True 2482 mRNA 0.46 8 8358310 8372506
XM_026923666.2 False 2042 mRNA 0.43 8 8358310 8388357

Neighbor

gene id symbol gene type direction distance location
dmtf1 dmtf1,LOC106594134 coding downstream 23821 8322995 ~ 8334489 (-)
dclre1c dclre1c,LOC108279967,LOC106595997 coding downstream 46641 8301479 ~ 8311669 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding downstream 67637 8283796 ~ 8290673 (-)
shank3b LOC108279923,LOC108428159 coding downstream 76431 8250112 ~ 8281879 (-)
tymp tymp,LOC104957567 coding downstream 110564 8239755 ~ 8247746 (-)
mical3b mical3b,LOC108279684,LOC107726023,LOC107658814,LOC107656292,LOC107592209,LOC108428167 coding upstream 2321 8390678 ~ 8426378 (-)
svopl svopl,LOC107656247,LOC107725968,LOC107744112 coding upstream 41138 8429495 ~ 8439796 (-)
si:dkeyp-27e10.3 kiaa1549,LOC108279680 coding upstream 54852 8443209 ~ 8471894 (-)
parp12b LOC108279682,LOC108428170 coding upstream 85580 8473937 ~ 8482571 (-)
sbf1 sbf1 coding upstream 99795 8488152 ~ 8548628 (-)
G278920 NA non-coding downstream 118634 8238974 ~ 8239676 (-)
G278911 NA non-coding downstream 141017 8217013 ~ 8217293 (-)
G278520 NA non-coding downstream 479293 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 824028 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 862047 7495572 ~ 7496263 (-)
G278963 NA non-coding upstream 1141 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 223761 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 310073 8698430 ~ 8698791 (-)
LOC113532431 NA non-coding upstream 420863 8809220 ~ 8809338 (-)
G279382 NA non-coding upstream 805259 9193616 ~ 9194003 (-)
G278912 NA other downstream 138630 8218561 ~ 8219680 (-)
G278634 NA other downstream 290233 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 387739 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 858231 7421988 ~ 7500079 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2373746 5982292 ~ 5984564 (-)
G279415 NA other upstream 818994 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1490124 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 1867615 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2606748 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 2690811 11079168 ~ 11094176 (-)

Expression


Co-expression Network