cdk17 (cdk17,LOC107656329,LOC107658862)


Basic Information

Item Value
gene id cdk17
gene name cdk17,LOC107656329,LOC107658862
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19190496 ~ 19247363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923684.2
taggcttttcctcttcctcccgTGTCGCTTCACTAGGCGGAGGCGTCAGTAGAGACGGGGAGCAACCCGAGCTGTGTCAGTATCCGCCGGAGTTCAAGCGAAAAccctttaaaaacacacactcggtCGGAGAGCTGTATCATAAACGGAGTCGTTTGGGTTTTGAGTTTATACCTCGAGTGCAGTTTTAAGCGCTGAGGCAGTAAAAGTCCCTAAAAACCGCGATAATCAACAATACCCGAGGAGCAGTGTGGAGAGAAAAGACGGCATCCGGCCTGCGAGAAAGAAGTAGCCGAGGGCTGGTCCTCTGGTCTAAGCGGCTCTTTTAGTTTCTGGCCTCAAGTGCCTCAGAGGCCCATGGAGAAGATGAAGCGGTTTAAGAGGCGTTTGTCGCTCACGCTGCGTGGCAGCCAGACCATCGATGAGTCCCTCTCGGAGCTCGCCGAGCAGATGACCATCGAGGAGAACAGCAGTAAGGACAGTGaGCCCATAGTGAGGAATGGACGGCCGCCCTCGTCTCATAGCATGCACTCGTTCTTGCACCAGTACACAGGCTCGTTTAAGAAGCCTCCTCTCCGCCGGCCTCACAGCGTCATCGGGGGCAGCTTGAGCTCCTTCATGGCCATGCCACGCAATGGCAGCAGACTCGATATAGTCCACGAGAACCTAAAGATGGGATCTGATGGTGAGAGTGATCAGGCATCAGGAACATCTTCAGACGAGGTTCAGTCACCCACTGGAGTGTGTCTCCGCACCAGGACACATCGCCGCATATCCATGGAGGACGTGAATAAGCGCCTGTCTCTACCTGCTGATATTCGGATTCCTGATGGTTATCTGGAGAAACTGCAGCTGAGCAGCCCCCCCTTCGACCAGCCACTCAGCCGCCGATCACGCAGGGCCTCACTGTCAGAAATTGGCTTTGGCAAACTGGAGACCTACATCAAACTGGACAAGCTTGGAGAGGGAACATATGCCACAGTTTTCAAAGGCCGGAGCAAACTGACGGACAACCTGGTAGCTTTGAAGGAGATCCGGTTAGAGCACGAGGAAGGGGCACCTTGCACAGCCATTAGAGAGGTTTCATTACTGAAGGACCTGAAGCACGCCAACATTGTTACGCTTCATGACATCGTCCACACAGAAAAATCCCTCACACTTGTCTTTGAGTACCTGGATAAGGATCTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGCATGCACAATGTTAAGATTTTCCTGTTTCAGATCTTGCGAGGACTGGCATACTGCCACAGACGTAAGGTTCTGCACAGGGACCTGAAGCCACAGAACCTCCTCATCAATGAGAGAGGGGAGCTCAAGCTGGCAGACTTTGGTCTGGCCCGGGCCAAATCTGTCCCCACTAAGACCTACTCAAACGAAGTTGTAACTCTGTGGTACAGACCTCCCGATGTGCTGCTCGGCTCTTCTGAATACTCCACGCAGATCGACATGTGGGGTGTTGGATGTATATTCTATGAGATGGCTGCTGGTCGGCCACTTTTCCCAGGCTCCACAGTGGAGGATGAACTGCATCTTATTTTCAGGCTATTGGGTACACCAACGGAGGACAACTGGCCAGGAATCTCATCTATCGAGGAATTCAAATCCTACAACTTTCCCAAATACAAACCACAGCCCTTCATCAACCATGCACCGAGGCTAGACACTGAAGGAATtgagttgttgttgtcatttctTAAGtACGAGTCCAAGAAACGAATTTCTGCTGATGATTCAATGAAACACTCTTACTTCAAGAGTCTGGGCATGCGCGTGCACACACTGCCTGAGAGTATCTCTATATTTACACTGAAAGAGGTGCAACTACAGCGAGACCCTGGCTACCGGAATGCCTCATACCCCGAgacagGAAACAGCAAGAACAGAAGACAGAGTATGCTGTTCTAAGCACTGGCTCTGACAAACACACTCgcacaagcatacacacacacgcgcatgcacacacacaagcacacacagtgGATCAGGATGATGGCGTTTGCTCAGCAACTGTCTTGTACAGACTAACAGACTAGCCTCCCTACCCTctttagtcagtgtgtgtgtgagggtgaaCGATGGGTGAGGGGGACTGACCAGTCCGGCTCTTTCCCATCCTCCTGTGTCCAGCATGCAGCCAGTCCCAGTGACAAAACACAGCGACGCCCCTGCCCCATGTCCGCTTCCTCAAGGCAACACATTGGAGTTTAGACTGTGAGATGGGAgcgtgtatatatgtgtgtatgtgtgtatttattgaaaAGGTcgttgggcttttttttttgctgctaatCAACTACTGTCTCCTTGTAACCTTCCCTACTCTCGGGCAGCCTTCCTGGTTGCGGACACATCAGTACTGCCGTcaaggatttctttttttttttaaaatagttattaTAATTCTGGAtataattatgttaataatgttCATATTGCAAATATCATGTTTGTTATTGGCCACATTTTGAATTgcatcctcttttttttttggcatggtTATTATGTAGAAATAATAGTTCCTACACACTTTGTAGAAGCTGTACAAAAACTCCTCACTCCCATTCCAATCTCCAAAGCTCACTTTGACATTTCAGATGACCCAGAGCCTGGAGAAGAGACCCTCCTCCTCTTTGTCAGTGAGAATGCAGCAAGTGTGTAGCTCGTTCAGGGAGACGAACTCACTGGTGTTCAGCCTGGTGAGAGAGCGCTAAACAGCTTTTTTTCGACTCATTTGTGACTGTCGCCACGTTCAGTCAGCATTGTGGAGCAAGCCGTGATGTCGGGGTGGAGGACCAAGCTGTGAGAGGGGGATCAAAACCACTGGACCAGCAGTAATCACGTGATCTTTGCAGAAATGACTGAAGACCTTCCACACCTTCCTCTTTGAGCAAATGTTCTCCTTTAGTGTCATTCTACTTATCCATTTCCTCAGTGAAAACTTTCTGCCTGGACTGAAGTgcttgtatgatttttttttccctttgagaGCAACTTATTCTAATGCATCATCAGTGATTGTACAAAAATGATTCATCCCAGATCTCTGtagcatttgtttatttgtgtgtgtgtcacagtgtaagagtgtaagagagtgagtgagtgagcgagcgaGCGTGTGTTTGTAAGAGATCATGGAGATCAGATTGTACAGAACCTTGTTGCACCATGCTAGTAAGTTTTCTGAAGATGCGTTAGTTTCATTAACAGTATTAAGACAATTTTTTCTAAGTTACATTTTGATTTGTCTGTGAATAATAGTATAACAGTGTGGCATGTTGGAGTCCAACTGTCTCACATTCATTCTTgaaatttctttatttagaaaaaaacgAGTGTGACAAATACAGGAACAAAAACTTGGCTACATCGGACCAACACTTTCCCCACCAATATTTGTACACATGAAGAAAAGATTCCAGACAGAGATTTTAGATTAAACAGACTATATTGTTTTTGAACTGACATCACTCTTGATTAATATTGTAATTTTGCAGTTGACTGTGATTGGAgaagcgtgtgtatgtgtgtagatgCATGGAACGCCTGGTGTCTTGTAAACCTCGCCTCTGTGGAACACTGACGCTCTCAGTTGAATGTCAGCTGAATTGACCATTTAACTCTTTCTACTGCAGATATTTATTTCTCTTGATCAGTGAAGTAAACATGGTCTGTTTCCTACGGaa
>XM_026923685.2
CTCTGACTCACACAAAGGATGTTGCGCTTCCTGTGGTTGTGTCGTTGAAAGGCTGCTGATCTCGGGCCTGCTGATGGCCTGCATTCTGCATTGTGCCACATTCTGAATCAATGTGCATCTATGCCCCAATGAGCCGCAGTGGAGGACAGCGTATATTGGCCTCAAGTGCCTCAGAGGCCCATGGAGAAGATGAAGCGGTTTAAGAGGCGTTTGTCGCTCACGCTGCGTGGCAGCCAGACCATCGATGAGTCCCTCTCGGAGCTCGCCGAGCAGATGACCATCGAGGAGAACAGCAGTAAGGACAGTGaGCCCATAGTGAGGAATGGACGGCCGCCCTCGTCTCATAGCATGCACTCGTTCTTGCACCAGTACACAGGCTCGTTTAAGAAGCCTCCTCTCCGCCGGCCTCACAGCGTCATCGGGGGCAGCTTGAGCTCCTTCATGGCCATGCCACGCAATGGCAGCAGACTCGATATAGTCCACGAGAACCTAAAGATGGGATCTGATGGTGAGAGTGATCAGGCATCAGGAACATCTTCAGACGAGGTTCAGTCACCCACTGGAGTGTGTCTCCGCACCAGGACACATCGCCGCATATCCATGGAGGACGTGAATAAGCGCCTGTCTCTACCTGCTGATATTCGGATTCCTGATGGTTATCTGGAGAAACTGCAGCTGAGCAGCCCCCCCTTCGACCAGCCACTCAGCCGCCGATCACGCAGGGCCTCACTGTCAGAAATTGGCTTTGGCAAACTGGAGACCTACATCAAACTGGACAAGCTTGGAGAGGGAACATATGCCACAGTTTTCAAAGGCCGGAGCAAACTGACGGACAACCTGGTAGCTTTGAAGGAGATCCGGTTAGAGCACGAGGAAGGGGCACCTTGCACAGCCATTAGAGAGGTTTCATTACTGAAGGACCTGAAGCACGCCAACATTGTTACGCTTCATGACATCGTCCACACAGAAAAATCCCTCACACTTGTCTTTGAGTACCTGGATAAGGATCTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGCATGCACAATGTTAAGATTTTCCTGTTTCAGATCTTGCGAGGACTGGCATACTGCCACAGACGTAAGGTTCTGCACAGGGACCTGAAGCCACAGAACCTCCTCATCAATGAGAGAGGGGAGCTCAAGCTGGCAGACTTTGGTCTGGCCCGGGCCAAATCTGTCCCCACTAAGACCTACTCAAACGAAGTTGTAACTCTGTGGTACAGACCTCCCGATGTGCTGCTCGGCTCTTCTGAATACTCCACGCAGATCGACATGTGGGGTGTTGGATGTATATTCTATGAGATGGCTGCTGGTCGGCCACTTTTCCCAGGCTCCACAGTGGAGGATGAACTGCATCTTATTTTCAGGCTATTGGGTACACCAACGGAGGACAACTGGCCAGGAATCTCATCTATCGAGGAATTCAAATCCTACAACTTTCCCAAATACAAACCACAGCCCTTCATCAACCATGCACCGAGGCTAGACACTGAAGGAATtgagttgttgttgtcatttctTAAGtACGAGTCCAAGAAACGAATTTCTGCTGATGATTCAATGAAACACTCTTACTTCAAGAGTCTGGGCATGCGCGTGCACACACTGCCTGAGAGTATCTCTATATTTACACTGAAAGAGGTGCAACTACAGCGAGACCCTGGCTACCGGAATGCCTCATACCCCGAgacagGAAACAGCAAGAACAGAAGACAGAGTATGCTGTTCTAAGCACTGGCTCTGACAAACACACTCgcacaagcatacacacacacgcgcatgcacacacacaagcacacacagtgGATCAGGATGATGGCGTTTGCTCAGCAACTGTCTTGTACAGACTAACAGACTAGCCTCCCTACCCTctttagtcagtgtgtgtgtgagggtgaaCGATGGGTGAGGGGGACTGACCAGTCCGGCTCTTTCCCATCCTCCTGTGTCCAGCATGCAGCCAGTCCCAGTGACAAAACACAGCGACGCCCCTGCCCCATGTCCGCTTCCTCAAGGCAACACATTGGAGTTTAGACTGTGAGATGGGAgcgtgtatatatgtgtgtatgtgtgtatttattgaaaAGGTcgttgggcttttttttttgctgctaatCAACTACTGTCTCCTTGTAACCTTCCCTACTCTCGGGCAGCCTTCCTGGTTGCGGACACATCAGTACTGCCGTcaaggatttctttttttttttaaaatagttattaTAATTCTGGAtataattatgttaataatgttCATATTGCAAATATCATGTTTGTTATTGGCCACATTTTGAATTgcatcctcttttttttttggcatggtTATTATGTAGAAATAATAGTTCCTACACACTTTGTAGAAGCTGTACAAAAACTCCTCACTCCCATTCCAATCTCCAAAGCTCACTTTGACATTTCAGATGACCCAGAGCCTGGAGAAGAGACCCTCCTCCTCTTTGTCAGTGAGAATGCAGCAAGTGTGTAGCTCGTTCAGGGAGACGAACTCACTGGTGTTCAGCCTGGTGAGAGAGCGCTAAACAGCTTTTTTTCGACTCATTTGTGACTGTCGCCACGTTCAGTCAGCATTGTGGAGCAAGCCGTGATGTCGGGGTGGAGGACCAAGCTGTGAGAGGGGGATCAAAACCACTGGACCAGCAGTAATCACGTGATCTTTGCAGAAATGACTGAAGACCTTCCACACCTTCCTCTTTGAGCAAATGTTCTCCTTTAGTGTCATTCTACTTATCCATTTCCTCAGTGAAAACTTTCTGCCTGGACTGAAGTgcttgtatgatttttttttccctttgagaGCAACTTATTCTAATGCATCATCAGTGATTGTACAAAAATGATTCATCCCAGATCTCTGtagcatttgtttatttgtgtgtgtgtcacagtgtaagagtgtaagagagtgagtgagtgagcgagcgaGCGTGTGTTTGTAAGAGATCATGGAGATCAGATTGTACAGAACCTTGTTGCACCATGCTAGTAAGTTTTCTGAAGATGCGTTAGTTTCATTAACAGTATTAAGACAATTTTTTCTAAGTTACATTTTGATTTGTCTGTGAATAATAGTATAACAGTGTGGCATGTTGGAGTCCAACTGTCTCACATTCATTCTTgaaatttctttatttagaaaaaaacgAGTGTGACAAATACAGGAACAAAAACTTGGCTACATCGGACCAACACTTTCCCCACCAATATTTGTACACATGAAGAAAAGATTCCAGACAGAGATTTTAGATTAAACAGACTATATTGTTTTTGAACTGACATCACTCTTGATTAATATTGTAATTTTGCAGTTGACTGTGATTGGAgaagcgtgtgtatgtgtgtagatgCATGGAACGCCTGGTGTCTTGTAAACCTCGCCTCTGTGGAACACTGACGCTCTCAGTTGAATGTCAGCTGAATTGACCATTTAACTCTTTCTACTGCAGATATTTATTTCTCTTGATCAGTGAAGTAAACATGGTCTGTTTCCTACGGaa

Function

symbol description
cdk17 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDK17 (cyclin dependent kinase 17).

NR:

description
PREDICTED: cyclin-dependent kinase 17

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923684.2 True 3719 mRNA 0.47 17 19190496 19247363
XM_026923685.2 False 3542 mRNA 0.47 17 19190496 19231087

Neighbor

gene id symbol gene type direction distance location
lta4h lta4h,LOC107656327,LOC106576033 coding downstream 29215 19140445 ~ 19161281 (-)
tfec tfec coding downstream 83070 19095392 ~ 19107426 (-)
ppp1r3aa NA coding downstream 402599 18781747 ~ 18787897 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 446334 18739775 ~ 18744162 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 514929 18665209 ~ 18675567 (-)
LOC117599463 NA coding upstream 5460 19252823 ~ 19254197 (-)
LOC117599464 NA coding upstream 13350 19260713 ~ 19262044 (-)
LOC117599574 NA coding upstream 24232 19271595 ~ 19272694 (-)
LOC113531838 NA coding upstream 35787 19283150 ~ 19284499 (-)
mcm10 mcm10 coding upstream 67250 19314613 ~ 19335240 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 252401 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 267599 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 328344 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 359357 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 367296 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 41228 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 109197 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 157716 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 158540 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 160907 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 442663 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 978103 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 978792 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1097952 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1099874 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 430920 19678283 ~ 19735232 (-)
G285607 NA other upstream 1065704 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2213463 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3238873 22486236 ~ 22489467 (-)

Expression


Co-expression Network