tnni4a (zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059)


Basic Information

Item Value
gene id tnni4a
gene name zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18225500 ~ 18233739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923733.2
TTTTAGTGAGCCATTCACATGTGGGAGGAGAGGCATCAGTCATCAAAAATCCACCACACTGACCTGTTCTCTGCCTGACTGCTCATTCTTGCTGACTTCTCGTTACAGGACACATAGTGCAGTGTGACCATGTCTGAGGGACCGAGGAAGTCCAGATCGAAATCCAAGTACCCGGCAACACGTAGGCTGCTGCTGAAGACCAAACTTCTGAAGAAGGCAGAGAGTCTCCTGGTAAAGGAAAAAGAGCAGAAGAAAATAGATCGAGACAATGTTCTGAATGAGAGAGTGCCTCCTCTAAAGCTCTCTGGACTCTCAGTACAGGAGCTTCAGGTACTTTGTAAAGATTTGCACCAAAAGATTGACATTGTGGATGAGGCTCGTTATGACCTTTCGATAAAAGTGGCCAGAAATGATTCAGAGATTCAATCACTGCAGCAGAAGATCTACGAGCTGAAAGGGAAGATGAACAGACCCAAACTGAAGAGAGTGAAGAAGTCGGCGGATGACAAGTTGGGAGCCCTGACAGACACTATGCACATGAAGGCCGACTTCAAAGCCAACTTGAAGACtgtgaagaaggaggaggaaaagCAGAAAGAGGAGGTGACAGACTGGAGGAAGAATGTGGAAGCCATGTCTGGGATGGAGGGCAGGAAGAAACTTTTCAATGCTGGACAGTGAACCAACAACATCCTgcagtgcttttaaaaaaattaatgttgcagaaaaaaCTATGTTTGATTAATTAGAAATATTTCCCTAAAGAACTCCGTATGGACTTATCTTGATGCAGtttcttgtgtgtatgtgtgtctgtttcgTCGTGTGATTGTTGAATATCTCAAAAATGTAAAGAGATTAGGCGTTTATGTCTTGCGTAGAGTACTGATCGTTGTTTTGAAGCTAAATTATGGAGCATATTATCAGGAGAGATGGATTAGACGGTAGAACAACATAATATTCCTATCATACcaactgtgtaaatatttgatTCATATTCAGTGTGATTAGGCTGAATAAATTTACTCTGTTTCCTCGCCAAA
>XM_026923734.2
TTTTAGTGAGCCATTCACATGTGGGAGGAGAGGCATCAGTCATCAAAAATCCACCACACTGACCTGTTCTCTGCCTGACTGCTCATTCTTGCTGACTTCTCGTTACAGGACACATAGTGCAGTGTGACCATGTCTGAGGGACCGAGGAAGTCCAGATCGAAATCCAAGTACCCGGCAACACGTAGGCTGCTGCTGAAGACCAAACTTCTGAAGAAGGCAGAGAGTCTCCTGGTAAAGGAAAAAGAGCAGAAGAAAATAGATCGAGACAATGTTCTGAATGAGAGAGTGCCTCCTCTAAAGCTCTCTGGACTCTCAGTACAGGAGCTTCAGGTACTTTGTAAAGATTTGCACCAAAAGATTGACATTGTGGATGAGGCTCGTTATGACCTTTCGATAAAAGTGGCCAGAAATGATTCAGAGATTCAATCACTGCAGCAGAAGATCTACGAGCTGAAAGGGAAGATGAACAGACCCAAACTGAAGAGAGTGAAGAAGTCGGCGGATGACAAGTTGGGAGCCCTGACAGACACTATGCACATGAAGGCCGACTTCAAAGCCAACTTGAAGACtgtgaagaaggaggaggaaaagAAAGAGGAGGTGACAGACTGGAGGAAGAATGTGGAAGCCATGTCTGGGATGGAGGGCAGGAAGAAACTTTTCAATGCTGGACAGTGAACCAACAACATCCTgcagtgcttttaaaaaaattaatgttgcagaaaaaaCTATGTTTGATTAATTAGAAATATTTCCCTAAAGAACTCCGTATGGACTTATCTTGATGCAGtttcttgtgtgtatgtgtgtctgtttcgTCGTGTGATTGTTGAATATCTCAAAAATGTAAAGAGATTAGGCGTTTATGTCTTGCGTAGAGTACTGATCGTTGTTTTGAAGCTAAATTATGGAGCATATTATCAGGAGAGATGGATTAGACGGTAGAACAACATAATATTCCTATCATACcaactgtgtaaatatttgatTCATATTCAGTGTGATTAGGCTGAATAAATTTACTCTGTTTCCTCGCCAAA

Function

NR:

description
PREDICTED: troponin I, slow skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923733.2 True 1043 mRNA 0.42 8 18225500 18233739
XM_026923734.2 False 1040 mRNA 0.42 8 18225500 18233739

Neighbor

gene id symbol gene type direction distance location
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding downstream 68940 18145872 ~ 18156560 (-)
arl1 arl1 coding downstream 83726 18137795 ~ 18141774 (-)
slc5a8 LOC108279688 coding downstream 119054 18097627 ~ 18106446 (-)
strip2 strip2,LOC107656389 coding downstream 202028 17990629 ~ 18023472 (-)
ano2b LOC108279462,LOC108425378 coding downstream 254256 17907628 ~ 17971244 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding upstream 250701 18484440 ~ 18593405 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding upstream 431470 18665209 ~ 18675567 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding upstream 506036 18739775 ~ 18744162 (-)
ppp1r3aa NA coding upstream 548008 18781747 ~ 18787897 (-)
tfec tfec coding upstream 861653 19095392 ~ 19107426 (-)
G284559 NA non-coding downstream 40508 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 136558 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 324233 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 327270 17895335 ~ 17898230 (-)
G284323 NA non-coding downstream 374606 17850457 ~ 17850894 (-)
G284590 NA non-coding upstream 112714 18346453 ~ 18346836 (-)
G284862 NA non-coding upstream 586203 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 597186 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 628106 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 634318 18868057 ~ 18938095 (-)
trnae-cuc_38 NA other downstream 13107 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 13796 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 132956 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 134878 18090551 ~ 18090622 (-)
trnaa-ugc_11 NA other downstream 141646 18083783 ~ 18083854 (-)
LOC113532190 NA other upstream 465182 18698921 ~ 18747833 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 1444544 19678283 ~ 19735232 (-)
G285607 NA other upstream 2079328 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 3227087 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 4252497 22486236 ~ 22489467 (-)

Expression


Co-expression Network