LOC113532368


Basic Information

Item Value
gene id LOC113532368
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12097521 ~ 12108662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923738.2
AAAACAGTCGGCGAGAAATACCCTGATCACCTTTCACCTATTAAtgttcacctaaaagagccgactcaaagagtcgactctctCGCGAACGACTCATCATTAAATATCCGTGTTTTGTTGCTTTAGCCGTAAGGATAATTAATAATGGCGGACGAAGCCAGTGTTATTGCAGTAATCTGCGCTAATCTCGGATGTGTGGAGTACGATGACCTTCTGCAGATGGCAGCAGTGGAAGATTTAGAAAATATTATCAAGAACAGggacattttcactgttataCAGCAAAACAAGAGCAAAAAAATCCTCGTCACTACTAGTATCAGACGCTGCAGAGCAAGAGAGTGCCAGGAGAGTTGTTCAGATCTGCATCTCTGTAAGTTTGACCTGTTGGGACAATGCAACACACAAAGGTGTAAATATGGCCACAGTCTGGAGGCGGAGCACAATTCCAGACTTTTGCGTGAgcacaacttacaggatttgaGCAAAGATCAACTTCGTGTACTGTTGCTACAGAATGACAGCTCCCTGTTGCCCAATGTCTGCGTCTCATACAACAAAGGCAGTGGTGAGTTTGGGAACTGTCCTGATAAGGAGGCCTGTATTCGTCTCCACGTCTGTGAGAAGTACATCAGAGGACTGTGTGACGGCAGCAGTGAGTGCAACAGGTGCCATGATTTCTATGAGCCTCATCCAATGAAAACACTGCAGGCCAGAGGAGTAGGCAGTCAGCTGATAGGATCTCTTTTGCTGATCTATCGGAATATTCTGACACTAAAGGACCACAGAAATGCTCAGGATAAACCTGGTGCGAGAAGCAAGGAGAACCCTAAGTTCAGCAACAGAACCAGAGTGCCCGAGTCCTTACAGAGGAATGCAGTTACAGGAAATGTGATTTGCCTGTCGTTTATCAGAGGAAACTGCAAATATGGagATAAATGCTGGAGAGTCCATTTTGGCGCTCCCTATAAGTGGGAGGTGGAAGTGGATGAGGTTTGGATAGACTTACCTGACAATGAAGTGATAGAAAGAGACTACTGCGATCCAGCCAAGATCCACAGTGTGGGCAGTGAGCCTGTGTGTTTTGACACAATGATGCAGGGAGTTCACAGGGTGCGGCGTCTCTCTACGGTGTCTTCAGTGATTGAACCCACCTTCAGCCACACTACAAAGTGGATCTGGTACTGGGAGAATGAGTATAATAACTGGATCGAGTACGGATCAATTAAGGAGATGCATAGGCTGTCCTCCATCACCAGTGAGGAACTGGAGAAAAAATATCTCCAATTCCAGCAAGACAACACCCATGATGTGGTTAAATTTGCCGCTGGTAAACAGTTTTATGAGCTGAATTTCAGAGATATGAAGCAGAGGAATGAAATAAGTAGCACAGAGAGAGCAATTAGACGGCGGCCgttgtttgtttctctctttaatGTTCGGACTGCTAGAACCAGCAGAAGAGGTCCAACCTCCAGCTCTCACACAGGTGTCCCAGGCTTTTGGGATAAAACTGCAGTTCCTGAATCTGGATTTCAGCGAGTCTTACTTAACGCGTCTCACAAGGATTATGTCAGAGTACAGGAACATTTCAGCAAGACTATGAAGGACTTTAGAATCCTGACCATCGAACGAGTCCAGAACAAGGAATTATGGGAGGATTTTCAGACGAAAAGAGAGCGaatgaaaaaagcaaacagCCACAAGAAATACGGCGAGGCAGAGCGATTGTTATTCCACGGCACCAACATCAGGAATGTTGACGCTATATGTCGCCAGAACTTTGACATGAGAGTATCTGGAGCTAACGCAACAGTGTACGGGCAAGGAAGTTACTTTGCCAGGGATGCAAAGTATTCCCATGATTACACAGATCACTATGCTGAAAGATCCATGTTTGCATGCAGAGTGTTGGTTGGACAGTACACTAAAGGAGAGTCCCATTACCGCAGACCTCCAGCCAGAGATGCGGCAGGAAATCTTTACGACAGCTGTGTAAATAACGTACGCGAGCCCACTATTTATGTAGTGTTTGAACGGTCCCAGGTTTACCCAGAATTTCTGATTACTTATGAGAAATCCAGGTTCCCTGAAGATATCAACATTATTCAATCTAATCGCACAGCAAATGTCAGCAAATGTTCAGCTATTTTTGATGATGCTTTAGATGTGAGCCAAACTGCAAGTGTGATCAGCACAAGCTCACCTCACAAGGCAAACAATATCGCCTCAGGTTCAACTAGCACAGGAGAGACATTAGCCTCTGCAAGCATCCCCACAATGAGAAAACCTCTTTCTGCTGCTCTGGATGCACCAGTAACTCCAGCTAAAGATGTCTCATCAGACTCTGAGACAGATGATACAAAAAGTCTAGATGTAGTCCTTGCGGCTACGAAATGTGAGCTACCTGTTCATTCACAGTCGACTCCAGGTTTAACTTCACTCAGCAGGTTGCTGAAAGTGTCAGATCAGGGCTTGGGTACATCTGTTACAAATCCAGTTTTCTCCAATTCAGATAATCTGCTAATCGCTGCTAAATCTAGCCTAACAGATAACAGTATTCAGTCTGGGATTACCAAAAACCAACAAGAGACTATGCCAGTTTGCATCTCTCCCTCTGATGGTTCCTTGTCAGGATCCTTAGTTTCCTTTCATGAAACCCACTCTTCTGAAAATGCCAGCCAACGGTTTGATGTCTTTGATGACGTATGTAATGTGACCCAGACAGCAAGTGTGGTTAGCACAAGTTCACCTCATAAGGCATACATCACTACTTCTGGTTCAAATAGTACAGGAGAGGAATTCCTCACTTCAAAGCCGGCTCAGGGTTTAACTTCACTGAGCTACACTGGGTTGCCAAGAAAATCAGCTCAAGACTTGGCTACATCTGTGAAaattccagtttcctcccattcAGATAATCAGCTGCTGATCTCTGGTAAGCCTAGCTTAACAGATAGAAGTGTACACTCTAAGCTTAGACCAAACCCAGACTTAGTCACTACACAAAGATCTCAGAGCTCACAGCAAGATTCACCTGCAGCTCACAGAGAAGTGGTGACCAACTTTTCGCATCCACTTTTAACTATACCAAGTTCTACAGTCAGGGCTAGAACTCTCAGCTCTGATGCCTCTCCTGCCAGCAGTCCTTCCtcaaaagaaagcaaaatcTCAGTGACGTACAAAACCAATTCCTCTTCAGCAGAtaagctgtctctctctgatggCTCCGTGTCAAGTTCTTTAGTTTCCTTTCATGAAATTCTGCCTTCTGCTGTCTCCAGCATACAAACTTCTCCAAAAAGCACAAGCTCTCAACGAGCATCACATCAGAAGATTAGCTTAGAAACTACCAGAAAAACGCAGAAGAAAGATTGTGTGGTGcagtgatttaatttaattgcttGCTTGTGATTGGGGCATTTATAGCTTCAGCTGTATTCATTACTGAATGAATAgttaaactgtaatatttgaTTGAAGTAGTAATTTGTTTCATTGTACACAAACATTGATTTCAGACCGTGCAGTTCATGTTAATTTACCATAATTGCTGCTCCCCATGTCTTACAAATGCAATGTATGAAGACATGAATAGCTTCTTACCAAGGTTACACAGTTGGTAGCCACTTAAATAAAATCTTGGGGACAAATTCTTGAAGGGCCTGTTCTTGTCTCTGAAGACTCTGA
>XM_026923739.2
AAAACAGTCGGCGAGAAATACCCTGATCACCTTTCACCTATTAAtgttcacctaaaagagccgactcaaagagtcgactctctCGCGAACGACTCATCATTAAATATCCGTGTTTTGTTGCTTTAGCCGTAAGGATAATTAATAATGGCGGACGAAGCCAGTGTTATTGCAGTAATCTGCGCTAATCTCGGATGTGTGGAGTACGATGACCTTCTGCAGATGGCAGCAGTGGAAGATTTAGAAAATATTATCAAGAACAGggacattttcactgttataCAGCAAAACAAGAGCAAAAAAATCCTCGTCACTACTAGTATCAGACGCTGCAGAGCAAGAGAGTGCCAGGAGAGTTGTTCAGATCTGCATCTCTGTAAGTTTGACCTGTTGGGACAATGCAACACACAAAGGTGTAAATATGGCCACAGTCTGGAGGCGGAGCACAATTCCAGACTTTTGCGTGAgcacaacttacaggatttgaGCAAAGATCAACTTCGTGTACTGTTGCTACAGAATGACAGCTCCCTGTTGCCCAATGTCTGCGTCTCATACAACAAAGGCAGTGGTGAGTTTGGGAACTGTCCTGATAAGGAGGCCTGTATTCGTCTCCACGTCTGTGAGAAGTACATCAGAGGACTGTGTGACGGCAGCAGTGAGTGCAACAGGTGCCATGATTTCTATGAGCCTCATCCAATGAAAACACTGCAGGCCAGAGGAGTAGGCAGTCAGCTGATAGGATCTCTTTTGCTGATCTATCGGAATATTCTGACACTAAAGGACCACAGAAATGCTCAGGATAAACCTGGTGCGAGAAGCAAGGAGAACCCTAAGTTCAGCAACAGAACCAGAGTGCCCGAGTCCTTACAGAGGAATGCAGTTACAGGAAATGTGATTTGCCTGTCGTTTATCAGAGGAAACTGCAAATATGGagATAAATGCTGGAGAGTCCATTTTGGCGCTCCCTATAAGTGGGAGGTGGAAGTGGATGAGGTTTGGATAGACTTACCTGACAATGAAGTGATAGAAAGAGACTACTGCGATCCAGCCAAGATCCACAGTGTGGGCAGTGAGCCTGTGTGTTTTGACACAATGATGCAGGGAGTTCACAGGGTGCGGCGTCTCTCTACGGTGTCTTCAGTGATTGAACCCACCTTCAGCCACACTACAAAGTGGATCTGGTACTGGGAGAATGAGTATAATAACTGGATCGAGTACGGATCAATTAAGGAGATGCATAGGCTGTCCTCCATCACCAGTGAGGAACTGGAGAAAAAATATCTCCAATTCCAGCAAGACAACACCCATGATGTGGTTAAATTTGCCGCTGGTAAACAGTTTTATGAGCTGAATTTCAGAGATATGAAGCAGAGGAATGAAATAAGTAGCACAGAGAGAGCAATTAGACGGCGGCCgttgtttgtttctctctttaatGTTCGGACTGCTAGAACCAGAAGAGGTCCAACCTCCAGCTCTCACACAGGTGTCCCAGGCTTTTGGGATAAAACTGCAGTTCCTGAATCTGGATTTCAGCGAGTCTTACTTAACGCGTCTCACAAGGATTATGTCAGAGTACAGGAACATTTCAGCAAGACTATGAAGGACTTTAGAATCCTGACCATCGAACGAGTCCAGAACAAGGAATTATGGGAGGATTTTCAGACGAAAAGAGAGCGaatgaaaaaagcaaacagCCACAAGAAATACGGCGAGGCAGAGCGATTGTTATTCCACGGCACCAACATCAGGAATGTTGACGCTATATGTCGCCAGAACTTTGACATGAGAGTATCTGGAGCTAACGCAACAGTGTACGGGCAAGGAAGTTACTTTGCCAGGGATGCAAAGTATTCCCATGATTACACAGATCACTATGCTGAAAGATCCATGTTTGCATGCAGAGTGTTGGTTGGACAGTACACTAAAGGAGAGTCCCATTACCGCAGACCTCCAGCCAGAGATGCGGCAGGAAATCTTTACGACAGCTGTGTAAATAACGTACGCGAGCCCACTATTTATGTAGTGTTTGAACGGTCCCAGGTTTACCCAGAATTTCTGATTACTTATGAGAAATCCAGGTTCCCTGAAGATATCAACATTATTCAATCTAATCGCACAGCAAATGTCAGCAAATGTTCAGCTATTTTTGATGATGCTTTAGATGTGAGCCAAACTGCAAGTGTGATCAGCACAAGCTCACCTCACAAGGCAAACAATATCGCCTCAGGTTCAACTAGCACAGGAGAGACATTAGCCTCTGCAAGCATCCCCACAATGAGAAAACCTCTTTCTGCTGCTCTGGATGCACCAGTAACTCCAGCTAAAGATGTCTCATCAGACTCTGAGACAGATGATACAAAAAGTCTAGATGTAGTCCTTGCGGCTACGAAATGTGAGCTACCTGTTCATTCACAGTCGACTCCAGGTTTAACTTCACTCAGCAGGTTGCTGAAAGTGTCAGATCAGGGCTTGGGTACATCTGTTACAAATCCAGTTTTCTCCAATTCAGATAATCTGCTAATCGCTGCTAAATCTAGCCTAACAGATAACAGTATTCAGTCTGGGATTACCAAAAACCAACAAGAGACTATGCCAGTTTGCATCTCTCCCTCTGATGGTTCCTTGTCAGGATCCTTAGTTTCCTTTCATGAAACCCACTCTTCTGAAAATGCCAGCCAACGGTTTGATGTCTTTGATGACGTATGTAATGTGACCCAGACAGCAAGTGTGGTTAGCACAAGTTCACCTCATAAGGCATACATCACTACTTCTGGTTCAAATAGTACAGGAGAGGAATTCCTCACTTCAAAGCCGGCTCAGGGTTTAACTTCACTGAGCTACACTGGGTTGCCAAGAAAATCAGCTCAAGACTTGGCTACATCTGTGAAaattccagtttcctcccattcAGATAATCAGCTGCTGATCTCTGGTAAGCCTAGCTTAACAGATAGAAGTGTACACTCTAAGCTTAGACCAAACCCAGACTTAGTCACTACACAAAGATCTCAGAGCTCACAGCAAGATTCACCTGCAGCTCACAGAGAAGTGGTGACCAACTTTTCGCATCCACTTTTAACTATACCAAGTTCTACAGTCAGGGCTAGAACTCTCAGCTCTGATGCCTCTCCTGCCAGCAGTCCTTCCtcaaaagaaagcaaaatcTCAGTGACGTACAAAACCAATTCCTCTTCAGCAGAtaagctgtctctctctgatggCTCCGTGTCAAGTTCTTTAGTTTCCTTTCATGAAATTCTGCCTTCTGCTGTCTCCAGCATACAAACTTCTCCAAAAAGCACAAGCTCTCAACGAGCATCACATCAGAAGATTAGCTTAGAAACTACCAGAAAAACGCAGAAGAAAGATTGTGTGGTGcagtgatttaatttaattgcttGCTTGTGATTGGGGCATTTATAGCTTCAGCTGTATTCATTACTGAATGAATAgttaaactgtaatatttgaTTGAAGTAGTAATTTGTTTCATTGTACACAAACATTGATTTCAGACCGTGCAGTTCATGTTAATTTACCATAATTGCTGCTCCCCATGTCTTACAAATGCAATGTATGAAGACATGAATAGCTTCTTACCAAGGTTACACAGTTGGTAGCCACTTAAATAAAATCTTGGGGACAAATTCTTGAAGGGCCTGTTCTTGTCTCTGAAGACTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923738.2 True 3690 mRNA 0.44 12 12097521 12108662
XM_026923739.2 False 3687 mRNA 0.44 12 12097521 12108662

Neighbor

gene id symbol gene type direction distance location
LOC113532343 NA coding downstream 4422 12083126 ~ 12093099 (-)
syn3 syn3,LOC108279673,LOC108412895 coding downstream 15750 11989144 ~ 12081771 (-)
ptpro ptpro coding downstream 172014 11865792 ~ 11925507 (-)
tbk1 tbk1 coding downstream 301596 11773891 ~ 11795925 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding downstream 328602 11760781 ~ 11768919 (-)
LOC113532307 LOC108279675 coding upstream 1581 12110243 ~ 12122771 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding upstream 145593 12254255 ~ 12272627 (-)
LOC113532409 NA coding upstream 255146 12363808 ~ 12367546 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 260947 12369609 ~ 12374384 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding upstream 267129 12375791 ~ 12394521 (-)
G281373 NA non-coding downstream 3462 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 61159 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 386537 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 507834 11589003 ~ 11589687 (-)
G281070 NA non-coding downstream 513884 11583393 ~ 11583637 (-)
G281455 NA non-coding upstream 142652 12251314 ~ 12254155 (-)
G281486 NA non-coding upstream 260297 12368959 ~ 12369265 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 348901 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 367602 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 1037620 13146282 ~ 13147358 (-)
dusp16 dusp16 other downstream 344608 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 437194 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 509497 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 838109 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1003345 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 3031263 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4292259 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4729873 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4849850 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5870101 17978763 ~ 17988280 (-)

Expression


Co-expression Network