def6c (LOC108279918)


Basic Information

Item Value
gene id def6c
gene name LOC108279918
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19432886 ~ 19444451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923748.2
GCGCCTGCGCCGTGCGCTTTCGGAAACGTGTTAGAGCACTTCACGGCGCTAAAAGCTGCCCTGGATTTATTCCTTTTAACTACAGGATGGTGGCTGAGCGATCAGAGGCGACATGGATCTAAAATCCGAGCTGCTCAAGTCCATCTGGTACGCGTTCACCTCGCTGGAGGCCGAGCGCAGCGGCAAAGTGTCCAAGTCCCAGCTGAAGGTGCTGTCTCACAATTTATACACTGCTCTGAACATCCCTCATGATCCTGTAGCCTTAGAGGAGCATTTCAAAGATAACGACAATGGACCCGTCTCTGATCACGGCTATATGCCGTACCTCAACAAGTACATTCTGGCGAAGGCCACCGAGGGTACGTTTAATAAGGAGACGTTTGATGAGCTGTGCTGGACGATGACGGCTAAGAAGAACTTCAAGCCCAGTATTCAGCAGGGGGTGTGTTCCCAAAGTGACTGCTTCAAGCTCTTCTGTCTGTTTAACCTGCTCTCTGAGGACCGTTATCCTCTCGTCATCATCCAGCCTGAGCTAGAGTACCTGCTGAAGAAGATCTCTACCGCTATGAGTCAGGAGTGGGATGGGAAGGCACTGGAGGATCTGCTATCCCAGGATTCTTCTTTGCAGGATGGCCTGTCTGTGTGGATGTTTTTGGAGCATCTCAGCGCAGGGCATCTTATGAAGGTGGACAGTAAGGAGGCCTTCAGCCTGGCACTGGATGACATCTTCATGGAGATGTACCACAATGTACTGAAGAAGggTTACATGCTGAAAAAGGGGCATGTACGTAGGAATTGGCATGAGCGCTGGTTTGTGCTTAAGCCAGGCAGCTTGGCCTACTACCTTAGTGAGGaccagaaagagaaaaagggagaggTCCAGCTGGATGGGAGCTGCGTGGTAGAGACCATGCCTGATAAAGAAGGAAGACGCTGTTTATTCTGTGTGAAGACTCCTGGCAGGACATATGAGATAAGTGCTTCAGATCAGAAACAGAGAGTGGAGTGGATTCAAGCTGTGCAGACAGCCCTCCGGCTGAAGACGGAGGGGAAGAGCTCAATGCATCAGGAGCTAAAGCTGCGCAGACGAGAGCTTCGGGAGAACAGCCAGAACAGTCAGAGGAGCGAGAACCAGAGCAGCCAAAGTGGTCAGAGAAGCCTGAGCCAGAGCAGCCAGAGTGAACATAGTGCTGAAGTCGAGGAGCCTCAACCTGTGACTCAACAGGGAGAACCAGAGAGCAAGGAACCAAACCTGGAAATCATAGACATCATCCAGCAACACCTGGAAATGGAGGTGCAGCGCAAGAAGGAGGATGCatgggagaaagagaaacagaaggagAGGCAACAAGAGCTGGAGAGACAGCTGGAGGAAGCAAATGAGGCCAGAGAGAACATGGTGGCTGCACTGGCTAAAATGGAAAGGGAGGTACAGCAGCAAAAGAAGAGGATACAGGAGCTGGAACTCACACAGCAGAAGCTGGAGGAGGCGCTCAATACACAGATTCAGGCCCGCTTAGAGGAGGAGAGAGTCCGACATGAGCTCGAGAGGCTActggaggaagaaaggaagaagctGACTGAGTTGATGCTCCGTCAGAAACGCTTGGAGACTCCTGATTGTGTGGAAACAACCCAGGAGAAAACACCTCAGCCCCAAAAAGATGAGGATAACATACTCCCTCCTGCATCCCCTGTGACCCCTCCGTCCTCTAGCCCCCAACTAACAATGTGTCCAGCCCAGGCCATTACAGAAACAGTGGAGACACATGAGTACAGTGTGGAGAAAGTGTCCGAGAATTCATCTAAAGCCCCACATTTGAGACAATGGAACGTCCAGCTCAACTGCCTTATGAAGCCGATCACACCAGCAGACAAGATGAAGCGTCTGTCAGGGAGGTCCAACTATCCCAAACACGGCCAGGCGCTCACCAGCACGGAGTTCATTGTAAAGTACCAGTCAACCGTCAGTGAAACAGAATCCTCCAACAGCCAGTTAcgaaagagagaagaggatgTGGTCAAACAAGAACCAATCACGGCATCTCGGGTTGAGGAACCAcagaaaaccagagaacatgTTGAGCAGAGCAAAGACTTTGCATAGTGATTCACTGACACAAGCTCAACAACAAGTAAACTTTTTGTGAGATTTGTTATTGATTGTAGAAGCCTTACTATCTTACATGAGTGAATAGCAACTGtagatataaatgtataaaaatgtagttGTAGGAATGCTAGAATATAGTATTTGCAAAAATGTGGGTCATCTACAGtaaagctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgggtgtggtTGTgttcgtttgtgtgtgtgtgtgtgtgtgtgtgtttaatggaaTACAATGTATAACACCAAACACATAATGCAATGTTACATATTTCCCACCACACACATTCTGTACTGTTGACTAACGCAacactcatttatttacagCCATTTCACTAAATCCAGACAGTACTAATTTCTAGttcaagttttcattttgtcaAATCAGTCAGTGACACCTGACTCATTAGGAGCTGGTAACCTTCAAGTCAATTCTaggaaattaatttttaaaaataacttgtatGCAGCAATACAACGTGTagatgaataataatgaaaagcaTTAAACTATGACCACGGGTTTGCTCAGCCCGGATTTACTAATGTCTTCCTTTAGTTATATTCTTGTTATTATATAATCTTGTTCATGTTGTACACCgcatatttcctgtttcactgtTTATTATCTACATCAGCAGTTTACACCACTTGACTTATACAGAACAATCTGATAGTGAGGACTGAATTCAgttctactgttttttttccccctgggTGAAGAATATTATAACATGTTAAGATATGACATATGTCTCATTATTTTGTGAATTAAGTGATTCcattctttatcttttatttcttctgttctCTCTTCTATGCTTCTGTATTGATTACTCTAGGTTTTTGCACTAGTGCCTGTTTGTAATTCTATAGATGACCAGTAGAGGGGGCACTTGTTCTGAAATTTCTTGCTTTTTGACATTCAGGCTAATACACTGCATACCTAAAACCTTGGTGCCTCACTGTCATCATTTGTCAATCCATGTAGAATAAGTCCTTAACCCATTATATATTAAGTTAATATTCCCCAACCACTGATTCAATTCAAAGACTTAGTGAAATAAAGCAAGAGGA

Function

NR:

description
PREDICTED: differentially expressed in FDCP 6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923748.2 True 3224 mRNA 0.45 12 19432886 19444451

Neighbor

gene id symbol gene type direction distance location
atxn10 atxn10 coding downstream 4623 19411830 ~ 19428263 (-)
pparaa ppara coding downstream 77748 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 97646 19314613 ~ 19335240 (-)
LOC113531838 NA coding downstream 148387 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 160192 19271595 ~ 19272694 (-)
cbll1 cbll1,LOC108438797 coding upstream 71903 19516354 ~ 19519608 (-)
cfap54 cfap54 coding upstream 188971 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 227074 19671525 ~ 19676383 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 415050 19859501 ~ 19868173 (-)
si:dkey-39a18.1 LOC108279454 coding upstream 447461 19891912 ~ 19896958 (-)
LOC117599445 NA non-coding downstream 2327 19429170 ~ 19430559 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 24081 19408270 ~ 19408805 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding downstream 26758 19405903 ~ 19406128 (-)
G285287 NA non-coding downstream 27569 19405079 ~ 19405317 (-)
LOC113532309 NA non-coding downstream 47023 19356560 ~ 19385863 (-)
G285331 NA non-coding upstream 115961 19560412 ~ 19560619 (-)
LOC113532316 NA non-coding upstream 136403 19580854 ~ 19588244 (-)
G285361 NA non-coding upstream 232389 19676840 ~ 19677595 (-)
G285362 NA non-coding upstream 266446 19710897 ~ 19719135 (-)
G285437 NA non-coding upstream 472158 19916609 ~ 19920334 (-)
LOC113532190 NA other downstream 685053 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1220493 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1221182 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1340342 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1342264 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 233832 19678283 ~ 19735232 (-)
G285607 NA other upstream 868616 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2016375 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3041785 22486236 ~ 22489467 (-)

Expression


Co-expression Network