LOC113532385 (kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431)


Basic Information

Item Value
gene id LOC113532385
gene name kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13782762 ~ 13787434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923772.2
TACAGTGTGTCTGCATTGCGTCGgaaccccctctctctctctctctctctctctctctctctctctctctcttctttcctcacCACGCTGTGTGCGTATGAAAACCTGCAATGTGCTTTAACATCATCATGGACTTCTTTTCGCTTGCAAATCTTCATTCCTCCCACcctccctttctccttctctcttcagCCTGGCGGCGTATGTgtgccagagagagagtgtgtgagagagagtgtgtgtatgtggctgTGCATCTCGGGACGTCCGTGTCTTGTTGATTTGCACCAAAGAGGAGAAAAGCAGTTGAAGCTGCGCCTGGAGAAGATGCACTCCTCACACTGTCATCGGTATCATTCTTTTTTCCATGCGTCTTCATCTGGCACCCATCCGGTTCCTTCGGCATGAGTTCAACACCCCGTCTAAAAGATTTCACCTGCCTGTTATTGCAAACTCGGATTGCATTTGAAACGGAACATGGGAAGCACCTCTGGATGTTATCGAAGACAAAGCAGCCGATTAATATTTCAAGAAAGCGCATAATGCTGCGCGTACTGCTGTAAGGCGATATTCATATTGAAAAAACCAAGGGGGGCCAGTGTAAAGTTGGAGCACCGGCAGCgcgcgcgctcacacacacacacacacacacacacacgtacacacactgatggAGTGACCCGGTACCGAACAAGCCCTTAAAACCTCGCCAAAGTGGTGAGTGAAAGAAGATGATGCAGTGGTCTACTGGAACTGGGAGCAGTCGAATTGGTAGTAAAAAGGAACCATATGAGCTTTCTCTTCTAATGGGGCTCGTGTCGTAGACAGTGTGTACAGTGGAGAGTGGAAACAATACAGGAGCTGGATGTCTGCTCATCTAGCTTCAATATTTTCTCTGGTACTGCAAGTCTAAGCTGCAGAAATGACTGTGGTGGCAGGAGATAACATGGATGAGACCTCAACCCTGCCAGGGCATCCACATGATCCGTACCCCCATGACCACGAGGACCACGAGTGCTGCGAGCGTGTCGTTATCAACATCTCAGGACTGCGCTTCGAGACTCAACTCAAAACACTTGCCCAGTTCCCAGACACGCTGCTGGGTAATCCCAAGAAACGGATGCGCTACTTTGACCCTTTAAGGAATGAATACTTCTTTGACAGGAACCGGCCAAGCTTTGATGCCATCCTCTACTACTATCAGTCAGGTGGGCGGTTGAGAAGACCCGTCAATGTCCCTTTAGACATGTTCTCTGAGGAGATCAAATTTTACGAGCTTGGAGTAGAGGCCATGGAAAAATTTCGGGAAGATGAGGGCTTCATTCGTGAAGAGGAGCGTCCACTGCCAGAAAATGAATTTCAGAGACAGGTATGGCTCCTGTTCGAACATCCAGAGAGCTCAGGCCCTGCGCGTGGCATCGCAATTGTGTCAGTCATGGTCATTCTGATTTCTATAGTCATATTTTGTCTGGAGACCTTGCCAGAACTCAAAGAGGATCCACAGGGGCATTTGCAAACTATTGGGAACAGTACTTTCTACTACAAGCCAAACATTTTCACAGACCCCTTCTTTGTTGTGGAAACCCTCTGCATCATTTGGTTCTCCTTTGAACTGATTGTCCGTTTTTTCGCTTGCCCAAGCAAAGCAGCCTActttaaaaacatgatgaaCACGATTGATGTAGTGGCAATCATCCCCTATTTCATCACGCTTGGCACAGAgcttgctgaagatgaagagggGAAGGAAGCAAAGGGAGGGGGTGAACAGGCCACATCTCTGGCCATCCTCAGGGTTATTCGTCTTGTCCGGGTGTTCAGGATCTTCAAACTTTCGAGGCACTCTAAAGGACTGCAGATTTTGGGGCAGACGCTGAAAGCCAGCATGAGAGAGCTGGGCCTCTTgatctttttccttttcatcgGTGTCATCTTGTTCTCTAGTGCAGTGTATTTTGCGGAGGCTGAGGAGAAGGAGTCCTTCTTCACCAGTATTCCGGATGCATTCTGGTGGGCCGTGGTCTCGATGACCACCGTGGGCTATGGCGATATGTACCCTGTGACCATCGGAGGCAAGATTGTGGGTTCCCTTTGCGCCATTGCTGGTGTGCTCACCATTGCACTTCCCGTCCCGGTGATTGTGTCCAACTTTAACTATTTTTaccacagagaaacagaaggaGAGGAGCAGGCACAGCTCCTCAATGTGAGTAATCCCAACATTGCATCTGACTCCAACTCCAGTCGACGCAGCTCATCTATCATAAGTAAGTCGGAATATGTGGAGACAGACGATGACATGAATAACAGCATTGACAATTTTAGGGAGGCAAACCTGAGAACTGGGAACTGCACTATCTCAAACCAGAACTGTGTGAATAAGGGCAAGCTTCTGACAGATGTGTAATTGTTGCTCcacttttattttgaagaaaCAACAAACATGACGTATTAATAATACGGGAATGCTTTATATAGGCCTAGGTCAATGCATTATTGCATTGCTTTTGCTTTACCAAGACAAGGAATACATTCATATGCCACtgaatttcaaaatgtttgCTGAAAATAAAGATATTGCAGATAAAAAGGAGATGAAAATGCAGGTCCAAATGGGAACTCTGTCACCACCTGTCAACAGTGTGATCATCAGGAAAACAACTAGACATGGATTATTACAATAACATTGTCCACAGCATCTGGAATTGAGTTCCTAGAGCATTATACAGATTCTGATGTGTTGTCTCATTTTTTGGGATAGGTGCTGTTGATCTTGAGGTTCACTGAACAGCAATGCACCTCATTATTAATGGCTTCTTGCCAATGCTGGTATTTCTCCATCAGATGCTAAAACTCTTACTCCTATAAGATCCAATTCCATGTGAAAAACAACATGGCTTTTGGAAGTGTATAAGCATGTTGAAATATTCTTTGGTTCAATCATGGCATGCTCAAATCATTACCTCaatattttttctattcatttacATATTGCCCTCAAATTTCAGACTTTGGTTTTGCAAAATGCAGTGCTTATTACATTCTGTTCCTGGTATAGATTGAGAAATGAATGTTTAATCATAAGGTTGGAGCAGTGAAGCTTTGAGGCCTACTCAACTCAGGTACTATGTATCTTGGTATGATTAATGCATGGCACCATTATTAACAGATCACAATGGATCTTTCTGTATGTACTTGTAGATTAATACAGGGATCCATACTAATTTCAACAACATATTTCGAAACAATATAGAAGTATGTTGTAATGGCATTTATTAGCAATGTCATTACATTCCAAACAGTATTACATCTGCAGTTAATGGGGAATGAAGGCGAAACCCTACAGATTATAGAACTGGCAATTAATGGATCTTGTTTTAAGGTACACTAATTAGGTCTTTGTAGGTTTTCTGGGTATCTGATGGTCAGTGAGCTAAATGTTTTGCATATGGGCTGATTCATTAGGCTATACCTACACCTGCCAGTGCAATGCTTTAAAAGTcaaaaaaatgcattcatgCTTGTCTTACCAACTTAACAAGAATCATGCCAACAGTGAACTTCTGAAAAGCTGCACAACTCTCATTAACTACCCTTTACTGCTTGCAACACATTTATGATTTCACAACATATTAACCATTTAGTCAACTTTACAAGTAAAATATTTAGTGTATCTGCTTTGACATCTACGCTGTTTGAagatatacatacagtatattactctGTATATGTTGCATATAGTGCCTTTAACCCCCCTTACGGACAGAACTTTTAAAAAGTGCCTCCATGTACAATAACATCAGTTTTACTGTGCAACTCCTTTTAACTGTATGATGCAATGTCAAGGACCAATCTGAGTATGATTTGTACTATAATAGTCAGAATATGCACAGCAAAACAAAGTTTGGTGTTTCTGTGTGCATGACATATTTCAGAATGAACAAGGTTCGTCACATGGCCTGAGTGTGCAGAAAGTGATGATTTGATGATTGCTAAAACAGACTGCTTGAGAAGTAGTACAAGGGAAAATAAGAACAGTTAGACCTCAGAAAACAAGTGGGATATCTTTTTTTTGCCCTATCAAACCTTGTACATAAATCCCGGTTGATTACCCCAGTTAATCTGAGAAACAGTCAATGTTGTGTAGAGATGagatgaaatatatattttttcttcttttttgc

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923772.2 True 4184 mRNA 0.43 2 13782762 13787434

Neighbor

gene id symbol gene type direction distance location
LOC117599536 itih5 coding downstream 18972 13751523 ~ 13763790 (-)
sfmbt2 sfmbt2 coding downstream 58132 13665323 ~ 13724630 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 134565 13621297 ~ 13648197 (-)
LOC113532074 NA coding downstream 233259 13532919 ~ 13549503 (-)
acot18 LOC108279984,LOC108261735 coding downstream 260439 13509232 ~ 13522323 (-)
LOC113531720 itih5 coding upstream 20975 13808409 ~ 13829508 (-)
kin kin coding upstream 64109 13851543 ~ 13858673 (-)
LOC113531970 LOC108279954 coding upstream 1086416 14873850 ~ 14885572 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding upstream 1245214 15032648 ~ 15047471 (-)
LOC113531968 LOC108279915,LOC107597036 coding upstream 1272078 15059512 ~ 15078787 (-)
LOC117599591 NA non-coding downstream 207387 13571800 ~ 13575375 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding downstream 218816 13559259 ~ 13563946 (-)
G282060 NA non-coding downstream 354890 13427657 ~ 13427872 (-)
G282047 NA non-coding downstream 373436 13407613 ~ 13409326 (-)
G282006 NA non-coding downstream 409714 13320173 ~ 13373048 (-)
G282279 itih2,LOC107555817 non-coding upstream 45814 13833248 ~ 13837431 (-)
G282283 itih2,LOC106576198 non-coding upstream 51224 13838658 ~ 13840594 (-)
G282349 NA non-coding upstream 150222 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 166565 13953999 ~ 13969897 (-)
G282404 NA non-coding upstream 545498 14332932 ~ 14333132 (-)
dusp16 dusp16 other downstream 2029849 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 2122435 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 2194738 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2523350 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2688586 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1352491 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2613487 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3051101 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3171078 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4191329 17978763 ~ 17988280 (-)

Expression


Co-expression Network