shisal1a (LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751)


Basic Information

Item Value
gene id shisal1a
gene name LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12488395 ~ 12517683 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923774.2
cacacacacgtgcgctctctctctcctcagttATTCTCTCAGGATCAGTCTATACCTCACTCTGTGTtaccagtgtgggtgcaggatTGAGTGCAGAGAAAGTGTGCagttctcctcctcctctctctccatttgTTTACTCTGTatgtcccacacacactcctaactGGTTTTTACTTCACAGCTGCTGCAGCAGTAGAATGTGTGGAGCAGTGGACTGTCTCTATCCGGGCTGCGTGAAGAACACGTTCAATATGCTGCACGAGGCTGCAAACTGATTctccaaaggaaaaaaaaaaaaacaagaggaaCACAGGCTCCAGAATTATTCAGTCATGGCATATAAAAGCAGAGGGTTGGTTTGCATCCGAGACACACAGCAGATGTCCAAATTCACAGCGGACCATGAGtttgCAGCATGACGAGTGTAAGCAGACGAAAGaaagcaatgtgtgtgtgttaggtcacacctccctctctctcctgcgcctttcttttcttcatgaGGACAGAGAGATGACCATGCGAGGCCACTGGTCCTCCAACACCCTGGCTGTCATCTTCCTCCTGCTCTCCACTGCAGCTCTTTCAGCACACTTCAGAGTTTGCGAACCCTACTCTGACCACAAAGGGCGCTATCACTTCGGCTTTCACTGCCCTCGCCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACAGCCTTCAAGTACTGCTGCAACGAGACCGAGTTCCAGGGCATCATGCAGCTCAACCTCACCACCACCTCAGATGGTTTCGCTCACAATAATTACACCGCTCTTGTTGGTGTGTGGGTTTATGGTTTCTTCGTCATGATTCTGCTGGCTTTGGACTTCTTATACTATTCAGCCATGAACTATGAGGTGTGTCGTGTCTATCTGGAGAAGTGGGGACTGGGCGGTCGATGGCTGAAACAGGCCAGGAGCCAGTGGCACAGTGCCACCATAGCACAGGAGGGAGATCCGAGCTCAGGGACAAGTCTGAGCCAAGGCCCTCACCAACAACATCATCCCAGACAGAGTTTAAGAGGAGAGGTGGAGAGTCCTACCCTCCTGACCTTCCAGACCTCCACAGCATGGTGA
>XM_026923775.2
acacacacacacacacgtgcgctctctctctcctcagttATTCTCTCAGGATCAGTCTATACCTCACTCTGTGTtaccagtgtgggtgcaggatTGAGTGCAGAGAAACTGCTGCAGCAGTAGAATGTGTGGAGCAGTGGACTGTCTCTATCCGGGCTGCGTGAAGAACACGTTCAATATGCTGCACGAGGCTGCAAACTGATTctccaaaggaaaaaaaaaaaaacaagaggaaCACAGGCTCCAGAATTATTCAGTCATGGCATATAAAAGCAGAGGGTTGGTTTGCATCCGAGACACACAGCAGATGTCCAAATTCACAGCGGACCATGAGtttgCAGCATGACGAGTGTAAGCAGACGAAAGaaagcaatgtgtgtgtgttaggtcacacctccctctctctcctgcgcctttcttttcttcatgaGGACAGAGAGATGACCATGCGAGGCCACTGGTCCTCCAACACCCTGGCTGTCATCTTCCTCCTGCTCTCCACTGCAGCTCTTTCAGCACACTTCAGAGTTTGCGAACCCTACTCTGACCACAAAGGGCGCTATCACTTCGGCTTTCACTGCCCTCGCCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACAGCCTTCAAGTACTGCTGCAACGAGACCGAGTTCCAGGGCATCATGCAGCTCAACCTCACCACCACCTCAGATGGTTTCGCTCACAATAATTACACCGCTCTTGTTGGTGTGTGGGTTTATGGTTTCTTCGTCATGATTCTGCTGGCTTTGGACTTCTTATACTATTCAGCCATGAACTATGAGGTGTGTCGTGTCTATCTGGAGAAGTGGGGACTGGGCGGTCGATGGCTGAAACAGGCCAGGAGCCAGTGGCACAGTGCCACCATAGCACAGGAGGGAGATCCGAGCTCAGGGACAAGTCTGAGCCAAGGCCCTCACCAACAACATCATCCCAGACAGAGTTTAAGAGGAGAGGTGGAGAGTCCTACCCTCCTGACCTTCCAGACCTCCACAGCATGGTGA
>XM_026923776.2
cacacacacgtgcgctctctctctcctcagttATTCTCTCAGGATCAGTCTATACCTCACTCTGTGTtaccagtgtgggtgcaggatTGAGTGCAGAGAAAGTGTGCagttctcctcctcctctctctccatttgTTTACTCTGTatgtcccacacacactcctaactGGTTTTTACTTCACAGCTGCTGCAGCAGTAGAATGTGTGGAGCAGTGGACTGTCTCTATCCGGGCTGCGTGAAGAACACGTTCAATATGCTGCACGAGGCTGCAAACTGATTctccaaaggaaaaaaaaaaaaacaagaggaaCACAGGCTCCAGAATTATTCAGTCATGGCATATAAAAGCAGAGGGTTGGTTTGCATCCGAGACACACAGCAGATGTCCAAATTCACAGCGGACCATGAGtttgCAGCATGACGAGTGTAAGCAGACGAAAGaaagcaatgtgtgtgtgttaggtcacacctccctctctctcctgcgcctttcttttcttcatgaGGACAGAGAGATGACCATGCGAGGCCACTGGTCCTCCAACACCCTGGCTGTCATCTTCCTCCTGCTCTCCACTGCAGCTCTTTCAGCACACTTCAGAGTTTGCGAACCCTACTCTGACCACAAAGGGCGCTATCACTTCGGCTTTCACTGCCCTCGCCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACAGCCTTCAAGTACTGCTGCAACGAGACCGAGTTCCAGGGCATCATGCAGCTCAACCTCACCACCACCTCAGATGGTTTCGCTCACAATAATTACACCGCTCTTGTTGGTGTGTGGGTTTATGGTTTCTTCGTCATGATTCTGCTGGCTTTGGACTTCTTATACTATTCAGCCATGAACTATGAGGTGTGTCGTGTCTATCTGGAGAAGTGGGGACTGGGCGGTCGATGGCTGAAACAGGCCAGGAGCCAGTGGCACAGTGCCACCATAGCACAGGAGGGAGATCCGAGCTCAGGGACAAGTCTGAGCCAAGGCCCTCACCAACAACATCATCCCAGACAGAGTTTAAGAGGAGAGGTGGAGAGTCCTACCCTCCTGACCTTCCAGACCTCCACAGCATGATACTTGAAGCTTGACTCATTAGGATGTACTGTGCTTTTAAGGGCAGGAGAAGCCAAGGAGAAATAGCCACAGAAAGCTCACTGACTTTTCACAGAGTGACTCTCTGGGTTTGTCTCCCTATTTGtgatgtggattttttttttttttttgctccactGTGATGTTCAGTGAGGAAACCTACTTAACATAGTTGTCTGATCACCTGATCCCTATCTGCGCTACAGGAGAAGCACTATCTCTGACCATTCAACTGCAAAGCATCGTGATGTAAATGGCTGCCTGCGTCAAGAGAAAAGTGTGTTCTCTTATACTACTCACAGCACAAGGTGAGATGGACATCAGATTTTTCAGACTGCAGTAAACACAAGGCAAACTCTAGATACTGAATGTTCCCTTATACATCTCAGCAGGAAAAGCAgaggatattttatttattcaacgATTGTACTGGTTCTGTAGTGCTTTTTAAGTTAAAGGAATTTGgctagaaatgaaaatgaaattcaagACTTaacgaaaaacaaaacaaaccaaaaataaaagcatattgaTTATCTGAGATAAACCTTTTTTCACAGAcaaccaaaataataaatacatgggtttgaaaaatgtcaaaactgAAAGTTTGTATATGATCAGTATCCACGCGTTAATATCACTTGTTGACAGTGATATGTGTACTCTTGCAATAGTACTTCTGAACTACTGAAGTTGAGAATGTCAGATAAAGCAATATGTCATGCTAGAAAATCATGAAGACGTACGGTGGATTTCACGTGTGTGATTGTTCCTAATGAATTACTTGATTATGTGGTACTATTGCCTCATagagctttttttctttaggcTGGCCTCATGGTGCATTTACATTGTCGTGAAATGAAACAGCTGATTTGGAGCTCTCCAGAGTAAATCTATAGTATCTgcatctgtgcttttttttttttaacacatatCCATATAAGTACAGAATGAAGAATACGAGTAGCAAGAAAAGCtgatacagttattattatctCTTCCCTCTTGTGCTAGCATCTGAAACTGATCTAAGAGATTATGTTATCTGTGGCCATGACATGAACCCTTGCTTTGGCAGCAATGTGAATGCACCTTTGGTAGAAATCCTGCCGGTAGCTTTATTTTCCCATGTGGAAAACGTGCACTGACTTCAGGTGAGTTAATAGGAATAGTCAAAGCGAGTAGTTAGTCAACCTGCAATAAAGCACAGTATTGTGTTGCATTACATTGTGATAGAAAGAAACCTTTTTGTGATGTTGTTATCAGTGTTTTAGGTGACTCTAAATTCTCCTCCTAGCAGCCAGAGACATACTCGGTGGTACAGTAATGAGtactgatgatggtgataagTTGCCTTACTGTAAAACTATTGTACACCTAGCACCAGTTTTGATGTGGGTTTTACGACTGTATGAAGTGTTTGGATGCAGTTTTGTTGTAATTGCACTTGTTAACTTTTTACTGTCacaagctgaaaaaaataaagatctaTCTTTTGCAGTGTGTTCAA
>XM_026923777.2
cacacacacgtgcgctctctctctcctcagttATTCTCTCAGGATCAGTCTATACCTCACTCTGTGTtaccagtgtgggtgcaggatTGAGTGCAGAGAAAGTGTGCagttctcctcctcctctctctccatttgTTTACTCTGTatgtcccacacacactcctaactGGTTTTTACTTCACAGCTGCTGCAGCAGTAGAATGTGTGGAGCAGTGGACTGTCTCTATCCGGGCTGCGTGAAGAACACGTTCAATATGCTGCACGAGGCTGCAAACTGATTctccaaaggaaaaaaaaaaaaacaagaggaaCACAGGCTCCAGAATTATTCAGTCATGGtttgCAGCATGACGAGTGTAAGCAGACGAAAGaaagcaatgtgtgtgtgttaggtcacacctccctctctctcctgcgcctttcttttcttcatgaGGACAGAGAGATGACCATGCGAGGCCACTGGTCCTCCAACACCCTGGCTGTCATCTTCCTCCTGCTCTCCACTGCAGCTCTTTCAGCACACTTCAGAGTTTGCGAACCCTACTCTGACCACAAAGGGCGCTATCACTTCGGCTTTCACTGCCCTCGCCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACAGCCTTCAAGTACTGCTGCAACGAGACCGAGTTCCAGGGCATCATGCAGCTCAACCTCACCACCACCTCAGATGGTTTCGCTCACAATAATTACACCGCTCTTGTTGGTGTGTGGGTTTATGGTTTCTTCGTCATGATTCTGCTGGCTTTGGACTTCTTATACTATTCAGCCATGAACTATGAGGTGTGTCGTGTCTATCTGGAGAAGTGGGGACTGGGCGGTCGATGGCTGAAACAGGCCAGGAGCCAGTGGCACAGTGCCACCATAGCACAGGAGGGAGATCCGAGCTCAGGGACAAGTCTGAGCCAAGGCCCTCACCAACAACATCATCCCAGACAGAGTTTAAGAGGAGAGGTGGAGAGTCCTACCCTCCTGACCTTCCAGACCTCCACAGCATGGTGA

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1644 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923774.2 False 1113 mRNA 0.51 5 12496039 12517676
XM_026923775.2 False 1037 mRNA 0.51 6 12496039 12517683
XM_026923776.2 True 2644 mRNA 0.43 6 12488395 12517676
XM_026923777.2 False 1042 mRNA 0.51 4 12496039 12517676

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.10 LOC108279797 coding downstream 36810 12445898 ~ 12451585 (-)
apex1 apex1,LOC107658891 coding downstream 53204 12430448 ~ 12435191 (-)
LOC113532240 NA coding downstream 73321 12411859 ~ 12415074 (-)
LOC113531803 NA coding downstream 78865 12402179 ~ 12409530 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding downstream 93874 12375791 ~ 12394521 (-)
cmasa NA coding upstream 52385 12570068 ~ 12579954 (-)
LOC113532438 NA coding upstream 63240 12580923 ~ 12581063 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding upstream 67154 12584837 ~ 12588680 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding upstream 74404 12592087 ~ 12636416 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding upstream 270199 12787882 ~ 12803422 (-)
G281527 NA non-coding downstream 10766 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 29303 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 119130 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 234240 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 394336 12093857 ~ 12094059 (-)
LOC113532391 NA non-coding upstream 628599 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 650992 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 741469 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 802490 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 889930 13407613 ~ 13409326 (-)
dusp16 dusp16 other downstream 735482 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 828068 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 900371 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1228983 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1394219 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2622242 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3883238 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4320852 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4440829 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5461080 17978763 ~ 17988280 (-)

Expression


Co-expression Network