lmo3 (lmo3,LOC107550907,LOC107757261)


Basic Information

Item Value
gene id lmo3
gene name lmo3,LOC107550907,LOC107757261
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20459629 ~ 20500907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923804.2
GCGCCATACGATGTAGGGATGACGGCACGCGGAGGGGTGAAGTGAAGAGAGTACGCCTTTGTCGTCCACTGTCATTATGTTCTCTCGCCTCCGCCacggctgctgctgctgctgctgctcttaGTGGCTTTCATTTCATAGGCGAGCTCTGACGGACGGCGCTGAGCTCGAGCCCCTTTTCAACCCCCTGCGTGTGCCTTTGTTTGCCGTTTTCgcgtttcctttttttttctcgcgAGGCGAAACAGGATTGTTAGCTGTAACAAAAGCGAGCCGCCCCCCATCCAGCTGCTCACTTCACGGAGAAGGGAAGCCCTCTCGTCGCATGGTGGTGGTGTGTTCAGGCGCCGGAGCGGGTCCACAAATGCAGAAAAGGGAGAAAAGTTTCGGTATACAAATGCTTTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAATACTGGCACGAGGACTGCCTAAAGTGTGCATGCTGTGACTGCCGCCTTGGCGAGGTGGGCTCCACGCTGTATACCAAGGCCAACCTCATCCTCTGCCGGCGGGACTACCTCCGGTTGTTTGGCGTGACGGGGAACTGTGCAGCCTGCAGCAAGCTCATCCCAGCCTTCGAGATGGTCATGAGAGCCAAGGAGAATGTCTATCACCTGGACTGCTTCGCCTGCCAGCTCTGTAACCAGAGgtTTTGCGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCCTGTGTCAGACAGACTACGAAGAGGGGCTGATGAAGGAAGGCTATGCCCCACAGGTCCGCTGACCCCTACATGACACTTTCGCTTGTGGGGAGAGAGCTGAGAGAGGACCTGAAAGGGGACATGCAGTCAGACACCAAAAGCACTACCATCCTCTCCAGCCCTTATCCTTGATAATGTACATAAGAAATGCCCACTATGGGGCACTGCTGTACAGAATAGCCATAGAGACTTGTTGTAAGTGGGGAAGGGGGTTTTGCAAGTCCCCCTGAGCAAAGTGACACTGGTCTTGGATATTGCTGTGGCTCTTTTGAAACAACCCTTCTTCTCCTCTGCCCCTAAGACCCATGGTCTCATGGAGACAATCCACCCCAAGGCCTGACAACTcgcacacctatacacacatcaaatcctgcaaaaaaaaaaaaaaaaaaaatgcaagcatATTCTTAGACCCCTCTCCACTGACCCCATTTCACTCTCAGGCTAAggacaataatt
>XM_026923805.2
AAGTGCTGATGAGATAAACATGCACGTGCTACACGCATGGCTTCATTAACTGTGTTTTGAGCCGCATGAGTGTAAGCGTGGTGTTCCGTGTTGCCTGTAATCAGAACTCACATGTATAAACACTGCAACACTGGACTGACTGTAGATTGCAAACAGAGCTTTGGTATACAAATGCTTTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAATACTGGCACGAGGACTGCCTAAAGTGTGCATGCTGTGACTGCCGCCTTGGCGAGGTGGGCTCCACGCTGTATACCAAGGCCAACCTCATCCTCTGCCGGCGGGACTACCTCCGGTTGTTTGGCGTGACGGGGAACTGTGCAGCCTGCAGCAAGCTCATCCCAGCCTTCGAGATGGTCATGAGAGCCAAGGAGAATGTCTATCACCTGGACTGCTTCGCCTGCCAGCTCTGTAACCAGAGgtTTTGCGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCCTGTGTCAGACAGACTACGAAGAGGGGCTGATGAAGGAAGGCTATGCCCCACAGGTCCGCTGACCCCTACATGACACTTTCGCTTGTGGGGAGAGAGCTGAGAGAGGACCTGAAAGGGGACATGCAGTCAGACACCAAAAGCACTACCATCCTCTCCAGCCCTTATCCTTGATAATGTACATAAGAAATGCCCACTATGGGGCACTGCTGTACAGAATAGCCATAGAGACTTGTTGTAAGTGGGGAAGGGGGTTTTGCAAGTCCCCCTGAGCAAAGTGACACTGGTCTTGGATATTGCTGTGGCTCTTTTGAAACAACCCTTCTTCTCCTCTGCCCCTAAGACCCATGGTCTCATGGAGACAATCCACCCCAAGGCCTGACAACTcgcacacctatacacacatcaaatcctgcaaaaaaaaaaaaaaaaaaaatgcaagcatATTCTTAGACCCCTCTCCACTGACCCCATTTCACTCTCAGGCTAAggacaataatt
>XM_026923806.2
TTCTCTAGGGAGCGCGCGCCGTCACTCCGGCTGTCTCTTATTAAGCTAACGACCTGCTTTCCTCGTCGTCTAGTTGTCTTACCGGTGAGGGATTGGCTTCGCGAGATCATAAAACCAGGATTCGCTGTTCTTCGAGTCTCATTCGCTGCTGAGCAAGTTGTTCCGCGCTTCCCGCGATGCTTAATCCGTGATCACTCAGGCGAAAACACCTGTAGCTTTTTCGTGTGCGCGCGCGATCCACGCGGACCTCGTTATTTCCGAGCGGAAGATAATCGTGATCTGCAGCTCGAGCTCGCTTTCGtgaacttttttattttcttgcttCGAGGAATACAGAGTGGGAGTGTGTACCAGTGTAGCCTGTGCAGCTACTCAAGTTCACTCTTCTGCAGAAGTTGGACAAGAAGGTATACAAATGCTTTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAATACTGGCACGAGGACTGCCTAAAGTGTGCATGCTGTGACTGCCGCCTTGGCGAGGTGGGCTCCACGCTGTATACCAAGGCCAACCTCATCCTCTGCCGGCGGGACTACCTCCGGTTGTTTGGCGTGACGGGGAACTGTGCAGCCTGCAGCAAGCTCATCCCAGCCTTCGAGATGGTCATGAGAGCCAAGGAGAATGTCTATCACCTGGACTGCTTCGCCTGCCAGCTCTGTAACCAGAGgtTTTGCGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCCTGTGTCAGACAGACTACGAAGAGGGGCTGATGAAGGAAGGCTATGCCCCACAGGTCCGCTGACCCCTACATGACACTTTCGCTTGTGGGGAGAGAGCTGAGAGAGGACCTGAAAGGGGACATGCAGTCAGACACCAAAAGCACTACCATCCTCTCCAGCCCTTATCCTTGATAATGTACATAAGAAATGCCCACTATGGGGCACTGCTGTACAGAATAGCCATAGAGACTTGTTGTAAGTGGGGAAGGGGGTTTTGCAAGTCCCCCTGAGCAAAGTGACACTGGTCTTGGATATTGCTGTGGCTCTTTTGAAACAACCCTTCTTCTCCTCTGCCCCTAAGACCCATGGTCTCATGGAGACAATCCACCCCAAGGCCTGACAACTcgcacacctatacacacatcaaatcctgcaaaaaaaaaaaaaaaaaaaatgcaagcatATTCTTAGACCCCTCTCCACTGACCCCATTTCACTCTCAGGCTAAggacaataatt
>XM_026923807.2
AATGTTAGAAGGGTGAATACGGAGAGCTGGAGGTTGGGGATCTAATTACCGGGCCATAATTGGGGGCTGGGGAATAGGCCGCCGTCCTCTCAACTCGCTGCAGATCAATTATGTTAAGAGAACATCTGTAAGTAGAGCTTAATGAGGTCCATTAGAGCAACATGCGCTGCCTCTCCCTAACCGGGCTTGTCAGCTCCTTGGATGAGCCGGAGAGCGCTGCTAACTGGGGACCTGCTGGAGGTGCTTAAATAGGAGAGGAGGGGAGGGAGCGAGGGAAGAAAgaagggagagaaaggaagCGCGCTCAGGTCGGTCTTGCCTTGCTGCCAACGGAAGATACGAGCCTTTTCTCGCATGGAGGAGGACGAAGGGGGGCTTTGAGATCGAGAGTGATCCAGACACAGAGCCGGGGGAAGGAGTTTGATCCGAAGCGCACGAGCTCGTCACACGCACGCGGCAACTTTCCCTCGGTATACAAATGCTTTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAGATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAATACTGGCACGAGGACTGCCTAAAGTGTGCATGCTGTGACTGCCGCCTTGGCGAGGTGGGCTCCACGCTGTATACCAAGGCCAACCTCATCCTCTGCCGGCGGGACTACCTCCGGTTGTTTGGCGTGACGGGGAACTGTGCAGCCTGCAGCAAGCTCATCCCAGCCTTCGAGATGGTCATGAGAGCCAAGGAGAATGTCTATCACCTGGACTGCTTCGCCTGCCAGCTCTGTAACCAGAGgtTTTGCGTGGGGGACAAATTCTTCCTGAAGAACAACATGATCCTGTGTCAGACAGACTACGAAGAGGGGCTGATGAAGGAAGGCTATGCCCCACAGGTCCGCTGACCCCTACATGACACTTTCGCTTGTGGGGAGAGAGCTGAGAGAGGACCTGAAAGGGGACATGCAGTCAGACACCAAAAGCACTACCATCCTCTCCAGCCCTTATCCTTGATAATGTACATAAGAAATGCCCACTATGGGGCACTGCTGTACAGAATAGCCATAGAGACTTGTTGTAAGTGGGGAAGGGGGTTTTGCAAGTCCCCCTGAGCAAAGTGACACTGGTCTTGGATATTGCTGTGGCTCTTTTGAAACAACCCTTCTTCTCCTCTGCCCCTAAGACCCATGGTCTCATGGAGACAATCCACCCCAAGGCCTGACAACTcgcacacctatacacacatcaaatcctgcaaaaaaaaaaaaaaaaaaaatgcaagcatATTCTTAGACCCCTCTCCACTGACCCCATTTCACTCTCAGGCTAAggacaataatt

Function

symbol description
lmo3 Predicted to enable metal ion binding activity. Is expressed in basal plate midbrain region; nervous system; neural plate; notochord; and presumptive diencephalon. Orthologous to human LMO3 (LIM domain only 3).

NR:

description
LIM domain only protein 3 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923804.2 False 1271 mRNA 0.53 4 20459629 20496492
XM_026923805.2 False 1045 mRNA 0.51 4 20459629 20496865
XM_026923806.2 False 1289 mRNA 0.52 4 20459629 20497375
XM_026923807.2 True 1352 mRNA 0.53 4 20459629 20500907

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc_16 NA coding downstream 37157 20422401 ~ 20422472 (-)
wif1 wif1,LOC107655595 coding downstream 203082 20242908 ~ 20256547 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 537157 19898260 ~ 19922472 (-)
si:dkey-39a18.1 LOC108279454 coding downstream 562671 19891912 ~ 19896958 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding downstream 591456 19859501 ~ 19868173 (-)
tmem121b cecr6 coding upstream 209062 20709969 ~ 20712919 (-)
mkrn1 mkrn1,LOC107725576 coding upstream 214133 20715040 ~ 20729637 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding upstream 291566 20792473 ~ 20894630 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding upstream 438838 20939745 ~ 21133493 (-)
si:dkey-222f8.3 LOC108279736 coding upstream 663799 21164706 ~ 21172260 (-)
G285693 NA non-coding downstream 17701 20440221 ~ 20441928 (-)
G285642 NA non-coding downstream 56372 20403022 ~ 20403257 (-)
G285641 NA non-coding downstream 57307 20401834 ~ 20402322 (-)
G285630 NA non-coding downstream 69203 20389735 ~ 20390426 (-)
LOC117599590 NA non-coding downstream 147094 20307343 ~ 20312535 (-)
G285791 NA non-coding upstream 77349 20578256 ~ 20578483 (-)
G285852 LOC108279938 non-coding upstream 203150 20704057 ~ 20776908 (-)
LOC117599568 NA non-coding upstream 236061 20736968 ~ 20749220 (-)
G285859 NA non-coding upstream 248859 20749766 ~ 20752267 (-)
G285907 NA non-coding upstream 395374 20896281 ~ 20896487 (-)
G285607 NA other downstream 139579 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 724397 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1711796 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2247236 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2247925 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 959919 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1985329 22486236 ~ 22489467 (-)

Expression


Co-expression Network