slc5a8 (LOC108279688)


Basic Information

Item Value
gene id slc5a8
gene name LOC108279688
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18097627 ~ 18106446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923815.2
CTCTCACTAATACGAGGACATGCTCTTCATTTTATTGACTCCTCAGCTACTTTTACTCATCATTTATTCTTAATAAATACTCATTTTTATTGGTGTTATACACACTGACTCTATACTGAGTCTCACTTTGCATCAGAGCCCAATGGAGAATCCAGCAGCAGCCTTCGGTATTTGGGACTATGTGGTTTTCGCTCTCATGCTCGTCATCTCAGCGGCTATCGGTGTTTATTATGCCGTCATCCAGCACAGAACGCAGACTCCCAGGGATTTTCTGGTGGGTGGCCAGAGTATGACGGCTGTGCCCGTTGCTCTGTCACTGACAGCCAGCTTCATGTCAGCCATCACGGTGCTGGCGACTCCAGTGGAGGTGTACTGTAACGGGGCTATCTTTGTTTTAAGCTGCTTAGGCTTTGTCCTGATGGTGGCCATCAGCTCAGAGTTCTTCCTCCCCATCTTCTACAGGCTGGAAATTACCAGCACCTATGAGTACCTGGAGTTGCGGTTCAACAAAGTGGTTCGGCTGTTTGGGACAGTGCTGTTCATCGTTCAGACAGTGAACCTTTTTACTGCAAAAATCTCTATTTACATGCagctttacatttttcatgcttATGTCACTGAACTTGAATATACATTGAGGAAatgttgttctttttctcttatTCCTCAGTTAGTGTACACTGGAGTGGTTATCTATGCACCAGCTTTGGCTTTAAACCAAGTGACAGGTATAAGTCTGTGGGGAGCTTTGATATCAACTGGAGTGGTGTGTACCTTCTACTGCACCTTGGGGGGATTCAAGGCTGTGGTGTGGACTGACGTATTCCAGATGATCATCATGTTGGTGCATGTTGGTCAATCGGTGTTTCTACAGGGCGGGGTCTCTGTCATCTTCAACAACTCTGCTGACGGTGGCCGACTCAACCTGTGGGACTTTGATCCCAACCCTCTGAGGAGGCACACGTTCTGGACCATCATCATCGGCAGTACATTTATCTGGACCAGTATGTATGGTATTAATCAAGCTCAGGTGCAGAGATATGTGTCCTGCAAAACACTTCTCCATGCCAAACTGTCTCTGTATATAAACCTGGTGTCACTCTGGGCCATTCTTCTATCTTCAGTATTTTGTGGGTTGTGTTTGTATTCATTTTACAAGAACTGTGACCCATGGACAGCAAAAATGGTGTCTGCTCAGGACCAGCTCATGCCGTACCTGGTGATGGACATTTTGGGGGACTACCCTGGCATTCCTGGCCTGTTTGTGGCAGCAGCATACAGTGGCACATTGAGCACAGTCtcctccagtgtcagtgcccTAGCTGCAGTGACAGTTGCAGATCTGATACGACCGTACTTCAGCTTGTCAGAGCAAAAACTTTCCTGGGCATCAAAAGGACTGAGTGTGTTCTATGGAGTAGTGTGCATTGGGCTGGCTGCTCTTGCATCTCTGATGGGAGGATTGTTACAGACAACTATCAGTATTGTTGGTACTATTGGTGGACCTCTACTCGGCCTCTTCTCTTTAGGCATCCTGTTTCCCTCTGCTAATTCCAAAGGAGGCTTGGCTGGACTGATCAGTGGATTAGTTGTGTCCCTCTGGATTTGCGTTGGAGCCCAGGTCTACCACCCGCTACCGGAGAACATCAGGCCTcttcctctacacacacacggCTGCAGCGTCACCACAGATGAAAATGACTTAATGAACTGGACTAGCTACTCAACACAGGCAAGCTATGTCACTTCAGCTGAGCAGGACAAAGCTGTGGACAgGCCTCTGCTGGCTGATTATTGGTACTCACTCTCTTACATGTATTTCTGCCCTATGGGGACTTTAGTTTGCATAGTTATTGGGCTGATTGTGAGTTTGTTCTCAGGGGGTAGAACATTAAAATTGGAACCAGGCCTGACATTAACAAAGGAGGATTTAACCTGCTACAAGATCTACAAAATACTAAAGCAGAAGgcTACAGGAAATGCAGACAGACTTGACCTGGTTATGGAGAAGGAGAAATCTGGCAGAACCAACCTTGCATTTTGTGATGTGGAGCTGGATATCACAAAAATTCAGGCACACAAAACTCTTGCATAGGACATTTTTAGTTGTCTTTGAACTCATCTTCTCTGACCTCATTACTAAAGCGAGGACTTCATCCTGTCAGCTTAACCCATTCATACCTTCCATCTCCAGGCTTGTGTACCTGTCACATGTCCTGATACACAAtttcctatcaaacctcaaGCTTTAAATCTTAAGCTTGCCTGAAGTTCTACAGTCGGCATTTACACTCAACATATATTTTTTGACGAAAAATATATTGCAGTTCTCCATGAATTTCATCAAGCTCTGACACCTGCACTTGTTACCCATCTGAATAGAGAAGTGAGAAGTGTTCTTGTAGTGGATCTTGTTTAAAATGAAGTGACTGGCTAACATTACCAATCTACTTCGAGTGTTTGCTAAGGTCATACAGTCAATAAATTGCTTTGAAATTTAGCTAGCATTACTTACCTTGGTTTATGCAATCACTTCGTTTCCTCAAGCTCGTAATAATAACAGTACAATGAGCTAGCTTAGACATTAAAATGAGCAACATGTTGGAAAATGTGAAGAACTCCCTGCTGAGGGTCTATTAGAAGAGTTTACAGCAGAATAAGACATGGCTCTGCTACAGAACTGTCAAGAGCTTCTGGGGCGTGCTGGAAAGTGTGTGCACGTTCATGAGGCTTGATTGTCATATCCAAAACTGTCAATCCCCTCGTCAACCACtcccttttaaataaaatgcatttattgtaAGGAAAAATACTGGGGGACATCAAGGTCAACTAATCttgtaaataatttgtggagacataaatttaaatttaagttttgTTCCTTCCCCATTCACTGACATGGGAATGTCTGGGGTCAGaaattgtactgcagccagtCACTAGATAGCCTCAGAGACgttttggcttcacttttgacTTCCTGTTAAAAtgtccactcatatatacagtcaatGGAATATAAGCTGTGAGATCATTATGCCAGGGTGTGCTTTTTCTCACTTATTATTCTTCTTTTAAGTGGGGATCCATTATCTACAGTGTAGCAGAATGTTGACTctaagtattcggtcacctgagTTCTGTGCGGCGAGAAGACAAAACAATCAAAGTCGATAAACCTGGGAGATTTTCAATAAAACTGCGTACAGTAGCCGACATGACTGTATACTCAATATGGTAGCATAGTGAAGTGCATACATTATGACTAagccacattttaaataaatgaaggagTGATCTGAGATAATTTCATTCTAATGTGACTATATTGTCTATATTCAATCCTgtattagtattaaatcaa
>XM_026923816.2
CTCTCACTAATACGAGGACATGCTCTTCATTTTATTGACTCCTCAGCTACTTTTACTCATCATTTATTCTTAATAAATACTCATTTTTATTGGTGTTATACACACTGACTCTATACTGAGTCTCACTTTGCATCAGAGCCCAATGGAGAATCCAGCAGCAGCCTTCGGTATTTGGGACTATGTGGTTTTCGCTCTCATGCTCGTCATCTCAGCGGCTATCGGTGTTTATTATGCCGTCATCCAGCACAGAACGCAGACTCCCAGGGATTTTCTGGTGGGTGGCCAGAGTATGACGGCTGTGCCCGTTGCTCTGTCACTGACAGCCAGCTTCATGTCAGCCATCACGGTGCTGGCGACTCCAGTGGAGGTGTACTGTAACGGGGCTATCTTTGTTTTAAGCTGCTTAGGCTTTGTCCTGATGGTGGCCATCAGCTCAGAGTTCTTCCTCCCCATCTTCTACAGGCTGGAAATTACCAGCACCTATGAGTACCTGGAGTTGCGGTTCAACAAAGTGGTTCGGCTGTTTGGGACAGTGCTGTTCATCGTTCAGACATTAGTGTACACTGGAGTGGTTATCTATGCACCAGCTTTGGCTTTAAACCAAGTGACAGGTATAAGTCTGTGGGGAGCTTTGATATCAACTGGAGTGGTGTGTACCTTCTACTGCACCTTGGGGGGATTCAAGGCTGTGGTGTGGACTGACGTATTCCAGATGATCATCATGTTGGTGCATGTTGGTCAATCGGTGTTTCTACAGGGCGGGGTCTCTGTCATCTTCAACAACTCTGCTGACGGTGGCCGACTCAACCTGTGGGACTTTGATCCCAACCCTCTGAGGAGGCACACGTTCTGGACCATCATCATCGGCAGTACATTTATCTGGACCAGTATGTATGGTATTAATCAAGCTCAGGTGCAGAGATATGTGTCCTGCAAAACACTTCTCCATGCCAAACTGTCTCTGTATATAAACCTGGTGTCACTCTGGGCCATTCTTCTATCTTCAGTATTTTGTGGGTTGTGTTTGTATTCATTTTACAAGAACTGTGACCCATGGACAGCAAAAATGGTGTCTGCTCAGGACCAGCTCATGCCGTACCTGGTGATGGACATTTTGGGGGACTACCCTGGCATTCCTGGCCTGTTTGTGGCAGCAGCATACAGTGGCACATTGAGCACAGTCtcctccagtgtcagtgcccTAGCTGCAGTGACAGTTGCAGATCTGATACGACCGTACTTCAGCTTGTCAGAGCAAAAACTTTCCTGGGCATCAAAAGGACTGAGTGTGTTCTATGGAGTAGTGTGCATTGGGCTGGCTGCTCTTGCATCTCTGATGGGAGGATTGTTACAGACAACTATCAGTATTGTTGGTACTATTGGTGGACCTCTACTCGGCCTCTTCTCTTTAGGCATCCTGTTTCCCTCTGCTAATTCCAAAGGAGGCTTGGCTGGACTGATCAGTGGATTAGTTGTGTCCCTCTGGATTTGCGTTGGAGCCCAGGTCTACCACCCGCTACCGGAGAACATCAGGCCTcttcctctacacacacacggCTGCAGCGTCACCACAGATGAAAATGACTTAATGAACTGGACTAGCTACTCAACACAGGCAAGCTATGTCACTTCAGCTGAGCAGGACAAAGCTGTGGACAgGCCTCTGCTGGCTGATTATTGGTACTCACTCTCTTACATGTATTTCTGCCCTATGGGGACTTTAGTTTGCATAGTTATTGGGCTGATTGTGAGTTTGTTCTCAGGGGGTAGAACATTAAAATTGGAACCAGGCCTGACATTAACAAAGGAGGATTTAACCTGCTACAAGATCTACAAAATACTAAAGCAGAAGgcTACAGGAAATGCAGACAGACTTGACCTGGTTATGGAGAAGGAGAAATCTGGCAGAACCAACCTTGCATTTTGTGATGTGGAGCTGGATATCACAAAAATTCAGGCACACAAAACTCTTGCATAGGACATTTTTAGTTGTCTTTGAACTCATCTTCTCTGACCTCATTACTAAAGCGAGGACTTCATCCTGTCAGCTTAACCCATTCATACCTTCCATCTCCAGGCTTGTGTACCTGTCACATGTCCTGATACACAAtttcctatcaaacctcaaGCTTTAAATCTTAAGCTTGCCTGAAGTTCTACAGTCGGCATTTACACTCAACATATATTTTTTGACGAAAAATATATTGCAGTTCTCCATGAATTTCATCAAGCTCTGACACCTGCACTTGTTACCCATCTGAATAGAGAAGTGAGAAGTGTTCTTGTAGTGGATCTTGTTTAAAATGAAGTGACTGGCTAACATTACCAATCTACTTCGAGTGTTTGCTAAGGTCATACAGTCAATAAATTGCTTTGAAATTTAGCTAGCATTACTTACCTTGGTTTATGCAATCACTTCGTTTCCTCAAGCTCGTAATAATAACAGTACAATGAGCTAGCTTAGACATTAAAATGAGCAACATGTTGGAAAATGTGAAGAACTCCCTGCTGAGGGTCTATTAGAAGAGTTTACAGCAGAATAAGACATGGCTCTGCTACAGAACTGTCAAGAGCTTCTGGGGCGTGCTGGAAAGTGTGTGCACGTTCATGAGGCTTGATTGTCATATCCAAAACTGTCAATCCCCTCGTCAACCACtcccttttaaataaaatgcatttattgtaAGGAAAAATACTGGGGGACATCAAGGTCAACTAATCttgtaaataatttgtggagacataaatttaaatttaagttttgTTCCTTCCCCATTCACTGACATGGGAATGTCTGGGGTCAGaaattgtactgcagccagtCACTAGATAGCCTCAGAGACgttttggcttcacttttgacTTCCTGTTAAAAtgtccactcatatatacagtcaatGGAATATAAGCTGTGAGATCATTATGCCAGGGTGTGCTTTTTCTCACTTATTATTCTTCTTTTAAGTGGGGATCCATTATCTACAGTGTAGCAGAATGTTGACTctaagtattcggtcacctgagTTCTGTGCGGCGAGAAGACAAAACAATCAAAGTCGATAAACCTGGGAGATTTTCAATAAAACTGCGTACAGTAGCCGACATGACTGTATACTCAATATGGTAGCATAGTGAAGTGCATACATTATGACTAagccacattttaaataaatgaaggagTGATCTGAGATAATTTCATTCTAATGTGACTATATTGTCTATATTCAATCCTgtattagtattaaatcaa
>XM_034313059.1
CTCTCACTAATACGAGGACATGCTCTTCATTTTATTGACTCCTCAGCTACTTTTACTCATCATTTATTCTTAATAAATACTCATTTTTATTGGTGTTATACACACTGACTCTATACTGAGTCTCACTTTGCATCAGAGCCCAATGGAGAATCCAGCAGCAGCCTTCGGTATTTGGGACTATGTGGTTTTCGCTCTCATGCTCGTCATCTCAGCGGCTATCGGTGTTTATTATGCCGTCATCCAGCACAGAACGCAGACTCCCAGGGATTTTCTGTTAGTGTACACTGGAGTGGTTATCTATGCACCAGCTTTGGCTTTAAACCAAGTGACAGGTATAAGTCTGTGGGGAGCTTTGATATCAACTGGAGTGGTGTGTACCTTCTACTGCACCTTGGGGGGATTCAAGGCTGTGGTGTGGACTGACGTATTCCAGATGATCATCATGTTGGTGCATGTTGGTCAATCGGTGTTTCTACAGGGCGGGGTCTCTGTCATCTTCAACAACTCTGCTGACGGTGGCCGACTCAACCTGTGGGACTTTGATCCCAACCCTCTGAGGAGGCACACGTTCTGGACCATCATCATCGGCAGTACATTTATCTGGACCAGTATGTATGGTATTAATCAAGCTCAGGTGCAGAGATATGTGTCCTGCAAAACACTTCTCCATGCCAAACTGTCTCTGTATATAAACCTGGTGTCACTCTGGGCCATTCTTCTATCTTCAGTATTTTGTGGGTTGTGTTTGTATTCATTTTACAAGAACTGTGACCCATGGACAGCAAAAATGGTGTCTGCTCAGGACCAGCTCATGCCGTACCTGGTGATGGACATTTTGGGGGACTACCCTGGCATTCCTGGCCTGTTTGTGGCAGCAGCATACAGTGGCACATTGAGCACAGTCtcctccagtgtcagtgcccTAGCTGCAGTGACAGTTGCAGATCTGATACGACCGTACTTCAGCTTGTCAGAGCAAAAACTTTCCTGGGCATCAAAAGGACTGAGTGTGTTCTATGGAGTAGTGTGCATTGGGCTGGCTGCTCTTGCATCTCTGATGGGAGGATTGTTACAGACAACTATCAGTATTGTTGGTACTATTGGTGGACCTCTACTCGGCCTCTTCTCTTTAGGCATCCTGTTTCCCTCTGCTAATTCCAAAGGAGGCTTGGCTGGACTGATCAGTGGATTAGTTGTGTCCCTCTGGATTTGCGTTGGAGCCCAGGTCTACCACCCGCTACCGGAGAACATCAGGCCTcttcctctacacacacacggCTGCAGCGTCACCACAGATGAAAATGACTTAATGAACTGGACTAGCTACTCAACACAGGCAAGCTATGTCACTTCAGCTGAGCAGGACAAAGCTGTGGACAgGCCTCTGCTGGCTGATTATTGGTACTCACTCTCTTACATGTATTTCTGCCCTATGGGGACTTTAGTTTGCATAGTTATTGGGCTGATTGTGAGTTTGTTCTCAGGGGGTAGAACATTAAAATTGGAACCAGGCCTGACATTAACAAAGGAGGATTTAACCTGCTACAAGATCTACAAAATACTAAAGCAGAAGgcTACAGGAAATGCAGACAGACTTGACCTGGTTATGGAGAAGGAGAAATCTGGCAGAACCAACCTTGCATTTTGTGATGTGGAGCTGGATATCACAAAAATTCAGGCACACAAAACTCTTGCATAGGACATTTTTAGTTGTCTTTGAACTCATCTTCTCTGACCTCATTACTAAAGCGAGGACTTCATCCTGTCAGCTTAACCCATTCATACCTTCCATCTCCAGGCTTGTGTACCTGTCACATGTCCTGATACACAAtttcctatcaaacctcaaGCTTTAAATCTTAAGCTTGCCTGAAGTTCTACAGTCGGCATTTACACTCAACATATATTTTTTGACGAAAAATATATTGCAGTTCTCCATGAATTTCATCAAGCTCTGACACCTGCACTTGTTACCCATCTGAATAGAGAAGTGAGAAGTGTTCTTGTAGTGGATCTTGTTTAAAATGAAGTGACTGGCTAACATTACCAATCTACTTCGAGTGTTTGCTAAGGTCATACAGTCAATAAATTGCTTTGAAATTTAGCTAGCATTACTTACCTTGGTTTATGCAATCACTTCGTTTCCTCAAGCTCGTAATAATAACAGTACAATGAGCTAGCTTAGACATTAAAATGAGCAACATGTTGGAAAATGTGAAGAACTCCCTGCTGAGGGTCTATTAGAAGAGTTTACAGCAGAATAAGACATGGCTCTGCTACAGAACTGTCAAGAGCTTCTGGGGCGTGCTGGAAAGTGTGTGCACGTTCATGAGGCTTGATTGTCATATCCAAAACTGTCAATCCCCTCGTCAACCACtcccttttaaataaaatgcatttattgtaAGGAAAAATACTGGGGGACATCAAGGTCAACTAATCttgtaaataatttgtggagacataaatttaaatttaagttttgTTCCTTCCCCATTCACTGACATGGGAATGTCTGGGGTCAGaaattgtactgcagccagtCACTAGATAGCCTCAGAGACgttttggcttcacttttgacTTCCTGTTAAAAtgtccactcatatatacagtcaatGGAATATAAGCTGTGAGATCATTATGCCAGGGTGTGCTTTTTCTCACTTATTATTCTTCTTTTAAGTGGGGATCCATTATCTACAGTGTAGCAGAATGTTGACTctaagtattcggtcacctgagTTCTGTGCGGCGAGAAGACAAAACAATCAAAGTCGATAAACCTGGGAGATTTTCAATAAAACTGCGTACAGTAGCCGACATGACTGTATACTCAATATGGTAGCATAGTGAAGTGCATACATTATGACTAagccacattttaaataaatgaaggagTGATCTGAGATAATTTCATTCTAATGTGACTATATTGTCTATATTCAATCCTgtattagtattaaatcaa

Function

NR:

description
PREDICTED: sodium-coupled monocarboxylate transporter 1

GO: NA

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923815.2 True 3367 mRNA 0.43 14 18097627 18106446
XM_026923816.2 False 3250 mRNA 0.44 15 18097627 18106446
XM_034313059.1 False 2971 mRNA 0.43 14 18097627 18106446

Neighbor

gene id symbol gene type direction distance location
strip2 strip2,LOC107656389 coding downstream 74155 17990629 ~ 18023472 (-)
ano2b LOC108279462,LOC108425378 coding downstream 126383 17907628 ~ 17971244 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding downstream 288338 17795884 ~ 17809289 (-)
LOC113531978 LOC108279914 coding downstream 481378 17611890 ~ 17616249 (-)
ckap4 ckap4 coding downstream 503310 17591120 ~ 17594317 (-)
arl1 arl1 coding upstream 31349 18137795 ~ 18141774 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding upstream 39426 18145872 ~ 18156560 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding upstream 119054 18225500 ~ 18233739 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding upstream 377994 18484440 ~ 18593405 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding upstream 558763 18665209 ~ 18675567 (-)
G284520 NA non-coding downstream 8685 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 196360 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 199397 17895335 ~ 17898230 (-)
G284323 NA non-coding downstream 246733 17850457 ~ 17850894 (-)
G284295 NA non-coding downstream 306864 17790534 ~ 17790763 (-)
G284559 NA non-coding upstream 73933 18180379 ~ 18184992 (-)
G284590 NA non-coding upstream 240007 18346453 ~ 18346836 (-)
G284862 NA non-coding upstream 713496 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 724479 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 755399 18861845 ~ 18862152 (-)
trnaa-ugc_14 NA other downstream 5083 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 7005 18090551 ~ 18090622 (-)
trnaa-ugc_11 NA other downstream 13773 18083783 ~ 18083854 (-)
trnaa-ugc_10 NA other downstream 14318 18083238 ~ 18083309 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other downstream 15266 18068598 ~ 18082361 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other upstream 50378 18156824 ~ 18211704 (-)
trnae-cuc_38 NA other upstream 105876 18212322 ~ 18212393 (-)
LOC113532190 NA other upstream 592475 18698921 ~ 18747833 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 1571837 19678283 ~ 19735232 (-)
G285607 NA other upstream 2206621 20313067 ~ 20320050 (-)

Expression


Co-expression Network