cmah (LOC108279485)


Basic Information

Item Value
gene id cmah
gene name LOC108279485
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 131691 ~ 164741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928101.2
AtacagtgtcacacacacacacacccacccatgCGACGTGCACACATccaagcgcacacacactcacacacacacactcacacacacgtgatCAGAGACAGCAGTAGGTTTGAGTGAGCAGCACTGCAACCACGATCATCAagATGTGTCAGGTGTCTCAGGTGGTGTTGAAGCTGGATGCTGCAGAGGCTCAGGGCCTGAAACACAGAATCAActtcaagaaaaataaagatggaAAATGTTTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaaGTTTTGGAAACACTTTCAGTCAGATTTGCCCACATCGCCACCGGATTGGGACTCTTTCCTAAAAACGGTTCCTGCTCAGGATTCTGATCAGTACCCCTGCGTTCTGTCTTATGTTATTGTCGGTGGTTTGATCGGTCTTGTTTGCTTTTCCCCtcccttgttttttttggcGTCACGCTCTCTACGAGATCTCTATGAGTGTGTATGcacgctctttctctctctcggttTCTCTTAGGTGGATGTGCCTGTTTGTTTTGA
>XM_026928102.2
acacacacacacacacacaagcgagTGCAGTTCTACAATTCTTACGCTGTCCTCATTAAGATGTGTCAGGTGTCTCAGGTGGTGTTGAAGCTGGATGCTGCAGAGGCTCAGGGCCTGAAACACAGAATCAActtcaagaaaaataaagatggaAAATGTTTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaaGTTTTGGAAACACTTTCAGTCAGATTTGCCCACATCGCCACCGGATTGGGACTCTTTCCTAAAAACGGTTCCTGCTCAGGATTCTGATCAGTACCCCTGCGTTCTGTCTTATGTTATTGTCGGTGGTTTGATCGGTCTTGTTTGCTTTTCCCCtcccttgttttttttggcGTCACGCTCTCTACGAGATCTCTATGAGTGTGTATGcacgctctttctctctctcggttTCTCTTAGGTGGATGTGCCTGTTTGTTTTGA
>XM_026928103.2
ACTGAAGTCATTAATTCTGTACTGTAGTTATGTGTAGTTGTAAGTGTGCTTATAACAGGATTCACTTTCACTTACTTACAGAATTCCTTTCAGTAACACTAAATGTGTCAGGTGTCTCAGGTGGTGTTGAAGCTGGATGCTGCAGAGGCTCAGGGCCTGAAACACAGAATCAActtcaagaaaaataaagatggaAAATGTTTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaaGTTTTGGAAACACTTTCAGTCAGATTTGCCCACATCGCCACCGGATTGGGACTCTTTCCTAAAAACGGTTCCTGCTCAGGATTCTGATCAGTACCCCTGCGTTCTGTCTTATGTTATTGTCGGTGGTTTGATCGGTCTTGTTTGCTTTTCCCCtcccttgttttttttggcGTCACGCTCTCTACGAGATCTCTATGAGTGTGTATGcacgctctttctctctctcggttTCTCTTAGGTGGATGTGCCTGTTTGTTTTGA
>XM_034313090.1
AtacagtgtcacacacacacacacccacccatgCGACGTGCACACATccaagcgcacacacactcacacacacacactcacacacacgtgatCAGAGACAGCAGTAGGTTTGAGTGAGCAGCACTGCAACCACGATCATCAagATGTGTCAGGTGTCTCAGGTGGTGTTGAAGCTGGATGCTGCAGAGGCTCAGGGCCTGAAACACAGAATCAActtcaagaaaaataaagatggaAAATGTTTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaagggctcaaaagtatttggacaagaagttaattgaccaggtgcggtccattccctc
>XM_034313091.1
TTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagTATTTGAAGAAAAGACGTTCAGTGTACTGTGAAggcttcttctccttcttcttcttgGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaaGTTTTGGAAACACTTTCAGTCAGATTTGCCCACATCGCCACCGGATTGGGACTCTTTCCTAAAAACGGTTCCTGCTCAGGATTCTGATCAGTACCCCTGCGTTCTGTCTTATGTTATTGTCGGTGGTTTGATCGGTCTTGTTTGCTTTTCCCCtcccttgttttttttggcGTCACGCTCTCTACGAGATCTCTATGAGTGTGTATGcacgctctttctctctctcggttTCTCTTAGGTGGATGTGCCTGTTTGTTTTGA

Function

NR:

description
cytidine monophosphate-N-acetylneuraminic acid hydroxylase

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0046381 CMP-N-acetylneuraminate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0030338 CMP-N-acetylneuraminate monooxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928101.2 True 2044 mRNA 0.49 15 131691 159282
XM_026928102.2 False 1961 mRNA 0.49 15 131691 164741
XM_026928103.2 False 2003 mRNA 0.48 15 131691 158881
XM_034313090.1 False 1838 mRNA 0.49 15 134189 159282
XM_034313091.1 False 1859 mRNA 0.49 15 131691 158349

Neighbor

gene id symbol gene type direction distance location
zdhhc17 zdhhc17,LOC102798393 coding downstream 23854 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 81654 14021 ~ 50037 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding upstream 211716 376457 ~ 394253 (-)
LOC117599468 LOC108262260 coding upstream 257772 422513 ~ 475215 (-)
LOC117599469 LOC108262260 coding upstream 316833 481574 ~ 570011 (-)
LOC117595727 LOC108262260 coding upstream 498984 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 521295 686036 ~ 694483 (-)
G274968 NA non-coding downstream 48443 82623 ~ 83248 (-)
G274918 NA non-coding downstream 97994 31803 ~ 33697 (-)
G274982 NA non-coding upstream 3863 168604 ~ 174698 (-)
G275028 NA non-coding upstream 82582 247323 ~ 280961 (-)
G275029 NA non-coding upstream 85930 250671 ~ 285231 (-)
G275024 NA non-coding upstream 126909 291650 ~ 292596 (-)
G275049 NA non-coding upstream 182473 347214 ~ 347449 (-)
LOC117599453 yeats4,LOC107555875,LOC107590554 other upstream 83595 248336 ~ 253845 (-)
LOC113535352 LOC107729140 other upstream 116693 281434 ~ 287052 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other upstream 190233 354974 ~ 369037 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other upstream 239220 403961 ~ 557687 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other upstream 350243 514984 ~ 525025 (-)

Expression


Co-expression Network