LOC117599422 (LOC108279481,LOC108262260,LOC108279495)


Basic Information

Item Value
gene id LOC117599422
gene name LOC108279481,LOC108262260,LOC108279495
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 376457 ~ 394253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312958.1
GGAGACGCTAACATACTCTGtctctTCTCCAGGTGATCTTTCCTGAACAGAGAGATGAAATCAGCAGAGAAACTCATCATCAtcgtttgttttctgtttcaaggtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTAAAGAAGAATTTGATGCAGACCTCAAGACAGCTCTTACAGGAATCTGGAATAAAGACGACCCTTACGAAAACAAAGTCTTTAACTCTAAAGAAACTACAGAGAACAAGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAACATCAGAGAGAGTGACAGTGGAAGATATTACTTTAGAATAGAAACTTCAGGAAAACTGAAAGTGACGTATAAATCTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCTGCTCCAGCTCCATGTCCCTCTAACCTCCCCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAAGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCGATTTCACCTGCACCGCCACCTACCAGCTCCAGAACAAGAACAAATCAGAACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAATTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTGAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtATGCTCCTAGAAACACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAACCATCTCACCATCAGCAAGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatGTTCCTCAGTTCTCTCCCTCCTCCAGCTGTAACACCACTCAGGATCTGATCCTGTGTTCCTGTGAGGTTCATGGAAATCCGTCTCCTAAACTGGAGTGGCGTCTCTCAGGTCAAACTGTCCTGCCGTCAGAAGCCACGCCCATCCAAGTGGAGTCTGTGGGCAACACGAGTTTAAGAAGATCCATTTTGTTTTCCATCCCTCAGTCAGTTAAGGACACGCCCACTCTGCAGTGTGTTGGCTCCAATAATCTGGGCAACGCCTCTCAGGTTTTCTTCTTCATAACTAAGGCTCAGAGGCCTGCTGAAgaacacagacacactgcagtactTTATCTggttctatctctctctgtggttctccttctgtgtgttggtgttattggATTTTTCATCTACAAATTAAAGCAATTGTCCAGGAAAATAAAGGTTCTACAGACAGGAGATACTTATgcttctctccagctctctgctGTACAGAACTCTGATTATGAAACTCTGCAGACTAACAGAGggaggagagaaaaaaagaacaactcCACTAGCATAGCTCCGCAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312958.1 True 1863 mRNA 0.46 12 376457 394253

Neighbor

gene id symbol gene type direction distance location
cmah LOC108279485 coding downstream 211716 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 268620 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 326420 14021 ~ 50037 (-)
LOC117599468 LOC108262260 coding upstream 28260 422513 ~ 475215 (-)
LOC117599469 LOC108262260 coding upstream 87321 481574 ~ 570011 (-)
LOC117595727 LOC108262260 coding upstream 269472 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 291783 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 510994 905247 ~ 906730 (-)
G275049 NA non-coding downstream 29008 347214 ~ 347449 (-)
G275024 NA non-coding downstream 83861 291650 ~ 292596 (-)
G275029 NA non-coding downstream 91226 250671 ~ 285231 (-)
G275028 NA non-coding downstream 95496 247323 ~ 280961 (-)
G274982 NA non-coding downstream 201759 168604 ~ 174698 (-)
G275141 NA non-coding upstream 46540 440793 ~ 448307 (-)
G275126 NA non-coding upstream 93539 487792 ~ 488922 (-)
LOC117599492 NA non-coding upstream 135846 530099 ~ 530740 (-)
LOC117599521 NA non-coding upstream 138573 532826 ~ 533618 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 309078 703331 ~ 704306 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 7420 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 89405 281434 ~ 287052 (-)
LOC117599453 yeats4,LOC107555875,LOC107590554 other downstream 122612 248336 ~ 253845 (-)
G274979 NA other downstream 230417 144583 ~ 146040 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other upstream 9708 403961 ~ 557687 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other upstream 120731 514984 ~ 525025 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other upstream 142193 536446 ~ 539298 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other upstream 166454 560707 ~ 629004 (-)
LOC117599529 NA other upstream 188945 583198 ~ 586818 (-)

Expression


Co-expression Network