LOC117599426 (LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400)


Basic Information

Item Value
gene id LOC117599426
gene name LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 907230 ~ 907847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312964.1
ATGTcgagactcactgctgatgcagaggttgtgtgtcgagagctgggctgtgggattcctgtggaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagcttcgGTGTAGAGGCAACGAATCTGAGATTGccttctgtccaacatcatcttcactcaaacactcagactgctcccattacaacgatgtgggattaatatgttctggtcacACAGAGGCTCGGCTGGTGAACGGATCGGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCGGTGAGTGgggcacagtttgtgctgtaggctgggatatgagagctgcagatgttctctgtgcacagctggattgtgggagtgctgtggctgtggtggaggtggactggtttggggaggggagtggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312964.1 True 420 mRNA 0.55 3 907230 907847

Neighbor

gene id symbol gene type direction distance location
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 500 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 212747 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 224155 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 337219 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 432015 422513 ~ 475215 (-)
LOC117599470 LOC107667668 coding upstream 267463 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 334291 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 458264 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 480349 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 484053 1391900 ~ 1395944 (-)
LOC117599477 LOC108279477 non-coding downstream 5390 900773 ~ 901840 (-)
LOC117599491 NA non-coding downstream 28976 877038 ~ 878254 (-)
LOC117599484 NA non-coding downstream 36755 869990 ~ 870475 (-)
LOC117599512 LOC108261384,LOC108279477,LOC108261687,LOC108261932 non-coding downstream 60249 845933 ~ 846981 (-)
LOC117599493 NA non-coding downstream 65962 840628 ~ 841268 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding upstream 189298 1097145 ~ 1313535 (-)
LOC117599494 NA non-coding upstream 224241 1132088 ~ 1132569 (-)
G275393 NA non-coding upstream 237758 1145605 ~ 1148764 (-)
LOC117599532 NA non-coding upstream 333520 1241367 ~ 1241904 (-)
LOC117599476 LOC108279477 non-coding upstream 353795 1261642 ~ 1262710 (-)
LOC117599510 NA other downstream 275843 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 278226 560707 ~ 629004 (-)
LOC117599533 NA other downstream 306201 597414 ~ 601029 (-)
LOC117599529 NA other downstream 320412 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 367932 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 355902 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 374607 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 508058 1415905 ~ 1441145 (-)
G275420 NA other upstream 558012 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 679923 1587770 ~ 1627263 (-)

Expression


Co-expression Network