LOC117599438


Basic Information

Item Value
gene id LOC117599438
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2628665 ~ 2630328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312978.1
atggaacaggaagtacacattctcctgaggaaggaggccatcgaggtggtccctcctcgcgacagagagtccgggctctacagccggtacttcattgttcctaagaagggtggagggctgcgtcccattttggacttgcggcagttgaacctctcagtcgcacgactgtctcagatcaggtccgaggactggtttgtcacgatcgacctaagagatgcatatttccatatctccatccttcctcaacacaggaagttcctgaggttcgcttttgggggtgaagcttaccaatatcgggttcttccgttcagcctagcactctcaccccgcaccttcacgaagtgtgtggatgctgctctggctcctatgcgactccggggcatccgcatactgaattatatcgatgactggttgatattagctcgatCGGAGCAGGTGGcgctgggtctgatggcagctgcgtccaacgtaataccttttggcctgctgtacatgagacccctacagtggtggctcaagaccagggggttctccctgaggggaaacccgctccgcatgatcaaggtcacgcggcggtgcctacgtgccttagacatgtggagggaacctgggttcttgtctcagggcccggtgctgggaGCTCCTTGTCGCCGCGTAACACTAGCGACGGATGCATctctcaccggatggggagcggtcatgagtggctgctctgcccgtggtctgtggagcggccgccatctcacttggcacatcaactgcctggagatgctggccatgtttctagcactgaaacactttctcccggaACTAAGAGgtcgccacgtgttggtgcgcaccgacaacacggcagtggtctcttatatcaaccaccagggaggtctgcgctcgcgcccctttacaggctggctccagatccttgtgtggtcccaggggaaactcctctcgctgagagcagtttatatccctggctgtctcaatatgggagcagacgcCCTGTCAAGGCAGGGAccggtgcccggggaatggaggctccaccccgaggtggtggagcagatatggcgtatgttcagccgagctcaggtggatctgtttgcgactcaggagacatcacactgtcccctctggttctctctgactcgtCCAGCTCCCCTAGGACTGGATGCTATGGTACAGACGTGGCCGAGGCCGCGTCTGTACGCCTTCCCCCCGGTCGCTcagctcccgggagttctggagagagtgcgccgggacggggTCCGCTTGCTGCTAGTAGCCCCATTCTGGcggggccgagtatggttcttggacctgatttcccttctcgacggctctccatgggagattcccgtcaggagggacctcctctcacaggcggggggCGACATCCTTCACCCCCGCCcagagttgtggaagctgtgggtgtggcctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312978.1 True 1434 mRNA 0.59 3 2628665 2630328

Neighbor

gene id symbol gene type direction distance location
LOC117599471 LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265 coding downstream 79971 2482383 ~ 2548694 (-)
LOC117599488 NA coding downstream 85034 2543147 ~ 2543631 (-)
LOC117599490 NA coding downstream 121571 2506587 ~ 2507094 (-)
LOC117599505 NA coding downstream 173584 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 199724 2428508 ~ 2428941 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 34069 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 38027 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 41693 2672021 ~ 2678032 (-)
pawr pawr coding upstream 574960 3205288 ~ 3246996 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding upstream 914748 3545076 ~ 3691686 (-)
G275524 LOC108261611,LOC108261423 non-coding downstream 59401 2535444 ~ 2569264 (-)
G275523 LOC108261400,LOC108261705,LOC108261423,LOC108261611,LOC108262466,LOC108261555,LOC108261384,LOC108279477 non-coding downstream 79013 2514744 ~ 2549652 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 168553 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 169824 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 191598 2436635 ~ 2437067 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 2098 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 204372 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 349509 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 587391 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 587861 3218189 ~ 3219050 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 516717 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 559536 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 566545 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 588603 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 1001402 1587770 ~ 1627263 (-)
G275981 NA other upstream 512206 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 596267 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 668929 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 799862 3430190 ~ 3494016 (-)
G276075 NA other upstream 906669 3536997 ~ 3538743 (-)

Expression


Co-expression Network