LOC117599443 (LOC108279803)


Basic Information

Item Value
gene id LOC117599443
gene name LOC108279803
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17486811 ~ 17494787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312988.1
GTAATTTAGGCTTTAACTAGTTTGAGCATCATGCAGTGGGGTAAAAAAGGAAACGCAGCTGAAGGAGTAGTTGAGCGGTCAGTCTTCCTGTAGTGATTAAAGTTTTCAGACAGCAGCTGTACACTGACAGGAACAACATGGGCTCTCTCCCTCTGTGCTCTGTGCGGCTGCTGGTGCCTCCACTGCGTCTCATGTCCGCCTTCATGTGGCGAGTCGTCCAGCAGCAGAACCTGGAGTATTTTGACAAGCTTGAAGAGTACATCCTCCTCATAACAAGGATGGTCCCTGAGATTCTGAGCGAAAGACAGAGGAGTGTGCTCATTATGGGTCTGAGAGCAAAGATGATTCTTGAAATGTGCAAAGATGAGCTACCAACTGATCTAAAGACTGTCAGGGCACGTCTTCACACAATTGAGTCTTTCAGTATGTCTAAGAGCACTGGTTCAGAGGTGGAGGTGTTACAGGGCAGATTGTTAAAGCTCGTCCTGAGCCTTCTTGAGGACCCGGTTAAAAAAGAGCATTTCTTTCAGGAGGTGTTCCCGCGTGAGTACGGTCCTGAATTTGATAAAGCACTGCAGGTCCTAGTTGGCCATTTTCTCTCCAGAATGGAACAGCTCCTTCCAGTGCCCAACTTCAAACAGgCTGCCCAATGGCTAGATACTGAACCCACAGGTTGGGAAGAGTTAGTACAGATGAACTGTGATCCCACCCACTTGCTTCCTCTGCTACAAAGTGACTATCATGGAAACCTGGATAGAAATGGACTCCCGTCTATCGTGGAGGAAAGAATCATCTCATCTTTGTCTCTCGCTTCTTTGACCGATGATGTCGTCCCAATTGAGAGCAAGTCTGATGATCAATCCGTCAGCATGGACAGCTCCTCCCAGACAGACCAGGATGTGATGCAGGACAGTAAGACGGATGTTTTATCCCACGTCATCGTCACTTCAGAAGCAACCAGTATGTCATAGCGAGACTGCATTGGAAGAGCTGGAATCGCTTACGTATAACAGACAAGAAGAAGGAGATTTAAATGAGAACGGTCTTAATGAAACCAGAGAGGAGACGACGAAAACCTCTCAAACGGAAAGTGAGGATGAAACATCAACAGACGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312988.1 True 1116 mRNA 0.47 7 17486811 17494787

Neighbor

gene id symbol gene type direction distance location
LOC117599538 LOC108279803 coding downstream 1390 17484558 ~ 17485421 (-)
slc37a3 slc37a3,LOC107562143,LOC107758206,LOC107601005,LOC106609230 coding downstream 5977 17462955 ~ 17480834 (-)
sapcd1 LOC108280126 coding downstream 47733 17434442 ~ 17439078 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding downstream 170229 17261690 ~ 17316582 (-)
LOC113532299 LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517 coding downstream 293572 17119346 ~ 17193239 (-)
LOC113531974 LOC108279712 coding upstream 3601 17498388 ~ 17506497 (-)
ckap4 ckap4 coding upstream 96333 17591120 ~ 17594317 (-)
LOC113531978 LOC108279914 coding upstream 117103 17611890 ~ 17616249 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 301097 17795884 ~ 17809289 (-)
ano2b LOC108279462,LOC108425378 coding upstream 412841 17907628 ~ 17971244 (-)
G284003 NA non-coding downstream 443531 17041627 ~ 17043280 (-)
LOC117599589 NA non-coding downstream 867093 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 1037045 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 1190621 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 1246910 16239515 ~ 16239901 (-)
G284131 NA non-coding upstream 12089 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 18823 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 26639 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 53545 17548332 ~ 17553258 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding upstream 63620 17558407 ~ 17564955 (-)
phf21b phf21b other downstream 458946 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 633416 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1079948 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2302736 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5733898 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 483976 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 532947 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 573811 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 588451 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 588996 18083783 ~ 18083854 (-)

Expression


Co-expression Network