casc1 (casc1)


Basic Information

Item Value
gene id casc1
gene name casc1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5405474 ~ 5419057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312990.1
ATGGACGAGTGGACCAGAATTCGCTGCAAACAAGAAGGCGATAATACAGAAATTGGCCCTGCCAAGAAGAAACAAAGCAAGCTCAGCAAGGCCGAGAAGGAGAGGttgaagaaagaggaagaagaacagAGACTCAAGGAGGAGGAGGAAGCTCGCCTGATTGCTGAgcaagaagagaaggagaggctggagagagaacaaaaggaagaggaagaacGACTGAGACTCGAGTTAAAGGACAGAGAGCGAAGAGAGGATGAGCTGAATGAACTACGCATCGTATTGGAGGAAAACCAGAAAGAAGTGAACATGTGGGAAGCTGCAGCCAGGGAGAAAGCTGAATGGGATCGGTACATGATTTGTGACGGCAGTCCAAACCCCGCTGTTCAACCCGAGATCAATACCTTCATCACTCTGTGGAAGGAGGACCCAGAGGTGGACATCCAGACCATCCTACAGCAATGTGCTTTGGCCTTGCGActaACAGATGAACTGGAGCTTCGTTTGAGTCAGGAGACTGAACCCGAGATTATTCAGGTGTATCAGGACACACTTCGGTCTCTGCAGTGTCTCATCCACGCCAAACACCAGAAAGCTGCTGAGGAGATCCTGAAGtCAGCTAAGACTTGTTCAGACATCGAGACCGGGAACATGCAGAAGATAGTGCGAGATGATCACATCACTCTGTGCTTGTGGGCAAACATCAACAAAAATCCCAGATTTAAAGGCTACCATTTCCAGGAGGCGGGGCTGAGCTTCGAGCTTCCTAAACCGCTGGCTATGAGTGACATTTGCGTGCGGATCCTTCACACCCGCTACGATCACCTGAGCCACCTGAGCATCCGGACACAAGCTCAGAATAAAAGTCCTgctacagaagaagaagaagaagccgaAGCAGACGCTGAGACTCTCAGTGAGACCCCTAAAGTGCTGGAGGATGGAGAGATGACGGGAGAAGATGAGGGGAGAGAAAGTGTACAGCAAGAAAAGGACGATCTCCAGTCACTTAAATCATCTGAAGGCAAGAAGagtaAGGTTAGTGTGCACTCAGCTAAAGAGGGGAGGAAAAGTTCTTCACTAAGCCTACAGGAGGAGGCAGAGGATCATTCGGAGAGCAACGTGGAAGGAGTGACCTCCTCTGGAGAAGCAGAAGACGAGGCTGACCCTGAACCGACTGTAGTGGAGCCACCGACCGACAACACCGAGCTGCACATCGTCGATCTGCATCGGTACACGCCCCTGGGCGGAGTCTACTACTTTGACGTGTTCCATCTACCACCCCAGTCTCTCACCATCAACGACTGGGAGCTGACAGAGATATTGGATACAGGTCTCCAGGACTTCCTGTATCCCTCAGAACAGCCTCACAGCTCTGTGTCAGCGAAGCTGGAGGACAGCGGTACACTCTCTTCCCCACCTGTAGGGGTCACTGTGGTTCTGCCCGAGTCTGTGATCTTCATGCAGGAGCCACAGGTGGCGCGATGGGACCCAGTCGGTCAGCACTGGCGAACGGACTGCATCGCCGAGACGTCATACAACAGCGAGGCGCGCAGCATCTCCTTTAAGATGGACGCTTTCTGTGCCTTCACTCTGCTACAGGAGACGCACGTCAACATGCTGTTTCAGTGTTGGGAGCTTCGACCTCAGGGTCAGGACTCGGTCACGCTCACCATCACTGCAGCGCTCACTGAAGTCAGCATCAGTGTCCAGGGGAATCAGTGCATGCTTCAGATGGCTCAGGCTCCTGGACTGAACCATATCCTGGGTAAATGGATGAGTCTCCCTGCTCTACAGACAGCCATGAGACGCGCCGGAGTCAACGTATTCGTTAGCGAGTATTCGGATAAGTACGTTACAGTCAGTGCCAAGGACCCGCTGATAGAGCACGCGGCGTACGAGCAGATGGCCTTGGTGTCCTCAGCTTTTGCTTTTTCTCGGAGTCAGTGGAACGCTCAGTGCGGACAGGAGCATCTCGTTcttcagGCATGCGAGCACCTGGAGGCGGGGCCTGTGCCagaggaggcgtggtctctgtacTTGCTCGGTGCTCAGAGGAGTCAGCGTTTGAAGATGACCGAAAAGAGTGACGGATTCTCACCGGAGCTGGCCGAAGAAACCGAGTTCCACTCCACTTTTCTGCACATGCTCAGAGACGGTGTCAGCCCGGAGGGGCGGGACAAATTAGACCACACCCACTACCTTTTCATTGATACGGTGCAGAGACTGCTGTGTGCCACCCGCTTGCTCACCTTctcctgatctctctctctctctctctctctctctctcacacacacttatatttCACCAAACTGAACACATACATCTTCAtttaacatcacacacatctttttctttttttaatcgaTATTCTTTAGAGTAAATATTAAACGATTTGTCTCTAATAGCTTCAATTCCTAGCACATTAACAACTGTTTCCAGACATGTGAACCTTTTTAGCACCCTAATCgtgcttaatggtatttttaattgcttatgtgtatatatttttatatccgTTACCCGATTTGTGAAGCTCAACAACCATCTAAACTGTTTGCAGTTAAACTTCTTTGTTTTTGCCCATGGTAATGCCTGACAAAcggattttacatgtgtgtttataattttatatagaaAAAGGACAGCTACAGGCAGCTACAGAGCTCCTGAGGActaagatgaaaaataatacacttttcaagaattaatttgtttgcatttctttaaaatgttgctTAGGAACATCAGTCATTTTGGAACACGTCTTTGAGATACAATGCTATTGAGTGGAAATTTAAAATCGTGTatattgctcatttttatgaagggtgctgATAAATCTGGAGAGC

Function

symbol description
casc1 Enables beta-tubulin binding activity and microtubule binding activity. Predicted to act upstream of or within microtubule sliding. Located in cilium; cytoplasm; and microtubule cytoskeleton. Part of axonemal dynein complex. Orthologous to human DNAI7 (dynein axonemal intermediate chain 7).

GO: NA

KEGG:

id description
K17580 CASC1; cancer susceptibility candidate protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312990.1 True 2855 mRNA 0.49 15 5405474 5419057

Neighbor

gene id symbol gene type direction distance location
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding downstream 43495 5339773 ~ 5361979 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 89567 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 401683 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 440381 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 466661 4925716 ~ 4938813 (-)
parpbp parpbp coding upstream 45256 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 95025 5514082 ~ 5528820 (-)
pah pah coding upstream 110099 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 146620 5565677 ~ 5625699 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 365853 5784910 ~ 5790989 (-)
G277066 NA non-coding downstream 46246 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 47270 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 78760 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 279996 5124473 ~ 5125478 (-)
G276980 NA non-coding downstream 294506 5106880 ~ 5110968 (-)
G277443 NA non-coding upstream 28094 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 140877 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 239427 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 242754 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 250511 5669568 ~ 5670534 (-)
tmpoa LOC108279628 other downstream 421159 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 666475 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 818378 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 562081 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 563235 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2002931 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2547762 7966819 ~ 7970571 (-)
G278634 NA other upstream 2634031 8053088 ~ 8068077 (-)

Expression


Co-expression Network