th2 (LOC108279869,LOC108437952,LOC107695848)


Basic Information

Item Value
gene id th2
gene name LOC108279869,LOC108437952,LOC107695848
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5514082 ~ 5528820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313041.1
GGGTCGTTTGATAACCGCTGGCTTTTTAGGCTTCTTAAAATGGAAGAAAGCGCAGACGCGTGACGCAGCGCTGCGCACATGGAGTCGCGCTCCTGCACCGCATTTCCATAAAGACCTCACGAGCTGCTGGTGTATATAAATCGCTTGGTACATGACAGGACACGGGGAGAAGCCTAAAGCCAAGAGCTAGCTGAGAGAATTATAGAGGCGTGAGATGAAGACGGAGAGCGTGGCGCAGAGTGTGCCTTTCAGCGGCAGAAAGCAGAGTCTCATCGAGGACGCgcagagagagagagacagggagagagacagggagagcaCAGCTGCGTCTCCGGGTCCATCGCGCAGCGGCGACAACTTGGTTTTTGAAGAGAAAAGCGGTAAAGTTACTCTGCACCTGCTCTTTACGCAGAAGAACGACAAAAATGCTGGATTCTTCAAGGCTGGGAAAGTCTTCGAGaCCTTTGAAGCAAAGCTGCTCCACCTGGAGAGTCGTGCAGCCCGAAGGTGTAAGAAAATGTCCTCAGATGAGCTGGAGTTCTTCATGCAGTGCGAAGTTCACAGCTCAGACACTGACACCTTCATTAACGCGCTCAGAAGAGTCGCAGATGAAGTGCGGCTTCTGCAGGACGAccgggtTCCATGGTTCCCACGAAAGATCAGCGATCTGGACAAATGCAATCACGTAATTACAAAGTACGACCCTGACCTGGACCAAGATCACCCTGGATATAGCGATCCGGAATACAGAAAACGGAGAGCGTTTATCTCTGAACTGGCTTTCAACTTCAAACAGGGCGAGCCATTACCCTATGTTGAATATACTCCAGAAGAGGTTGCCACTTGGAGAGAAGTGTACAGGACTTTGTCCTCCATCTATCCGTCGCATGCGTGCAGACAGTTCCTGGATGGCCTGCAGCAGCTGGAGAAAGAGTGCGGCTATGGAGAGCACAAAGTCCCTCAGCTCAGAGACGTGTCCAGTTTCCTGAAAGaaaagacAGGCTTCCAGCTGCGCCCAGTCGTGGGCTTGCTGTCGGCGCGGGACTTCCTGGCGAGTCTGGCGTTCAGGGTGTTCCAGTGCACGCAGTACATTCGCCATTCCTCATCACCCATGCACTCTCCAGAGCCGGACTGCTGTCACGAACTGCTCGGACACATCCCCATGCTCACGGACAAGGAGTTCGCTCAGTTTTCACAGGAGATTGGTCTCGCTTCTCTTGGAGCATCTGATGAGGATATAGAAAAGCTGTCTACTCTCTACTGGTTCACGGTTGAGTTTGGGCTCTGCAAGCAGAACGGCGCAGTAAAGGCGTACGGTGCTGGACTCTTATCCTCCTACGGAGAACTTTTGTACGCGCTCTCTAATGAACCCGAGTACAAGCCGTTCGTCCCTGCTGAGACAGCGGTCCAGCCGTACCAGGATCAGACGTACCAGCCCGTGTACTTTGTCTCCCAGAGCTTTGAGGATGCTACAAACAAGATGAGGCAGTACTCCTCCACCATCCAGAAGCCGTTCTCCATCAGATACGACCCGTACACCTGCTCCATGGAGATCCTGGATGACCCGGCTAAGATCCAGAGCGTTCTGGGCCGAATGAGAGAGGAGCTGAAGATTCTGCACGGTGCGTTAGAGAGACTGGGCCAAAGATGAGCCTGAAAGCCTGGTTCATCTTTCATCATGCGTTAA

Function

NR:

description
tyrosine 3-monooxygenase-like isoform X1

GO:

id name namespace
GO:0042423 catecholamine biosynthetic process biological_process
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0004511 tyrosine 3-monooxygenase activity molecular_function

KEGG:

id description
K00501 TH; tyrosine 3-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313041.1 True 1687 mRNA 0.53 13 5514082 5528820

Neighbor

gene id symbol gene type direction distance location
parpbp parpbp coding downstream 27075 5464313 ~ 5487007 (-)
casc1 casc1 coding downstream 95025 5405474 ~ 5419057 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding downstream 152103 5339773 ~ 5361979 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 198175 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 510291 4988481 ~ 5003791 (-)
pah pah coding upstream 336 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 36857 5565677 ~ 5625699 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 256090 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 481470 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 484204 6013024 ~ 6112709 (-)
G277443 NA non-coding downstream 65395 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 154854 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 155878 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 187368 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 388604 5124473 ~ 5125478 (-)
G277447 NA non-coding upstream 31114 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 129664 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 132991 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 140748 5669568 ~ 5670534 (-)
G277519 NA non-coding upstream 202025 5730845 ~ 5731069 (-)
tmpoa LOC108279628 other downstream 529767 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 775083 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 926986 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 452318 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 453472 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1893168 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2437999 7966819 ~ 7970571 (-)
G278634 NA other upstream 2524268 8053088 ~ 8068077 (-)

Expression


Co-expression Network