kcna1b (kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431)


Basic Information

Item Value
gene id kcna1b
gene name kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16815760 ~ 16817420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313042.1
ACCATATGAGCTTTCTCTTCTAATGGGGCTCGTGTCGTAGACAGTGTGTACAGTGGAGAGTGGAAACAATACAGGAGCTGGATGTCTGCTCATCTAGCTTCAATATTTTCTCTGGTACTGCAAGTCTAAGCTGCAGAAATGACTGTGGTGGCAGGAGATAACATGGATGAGACCTCAACCCTGCCAGGGCATCCACATGATCCGTACCCCCATGACCACGAGGACCACGAGTGCTGCGAGCGTGTCGTTATCAACATCTCAGGACTGCGCTTCGAGACTCAACTCAAAACACTTGCCCAGTTCCCAGACACGCTGCTGGGTAATCCCAAGAAACGGATGCGCTACTTTGACCCTTTAAGGAATGAATACTTCTTTGACAGGAACCGGCCAAGCTTTGATGCCATCCTCTACTACTATCAGTCAGGTGGGCGGTTGAGAAGACACAATGTCCCTTTAGACATGTTCTCTGAGGAGATCAAATTTTACGAGCTTGGAGTAGAGGCCATGGAAAAAATTTCGGAAGATGAGGGCTTCATTCGTGAAGAGGAGCGTCCACTGCCAGAAAATGAATTTCAGAGACAGGTATGGCTCCTGTTCGAACATCCAGAGAGCTCAGGCCCTGCGCTGGCATCGCGAATTGTGTCAGTCATGGTCATTCTGATTTCTATAGTCATATTTTGTCTGGAGACCTTGCCAGAACTCAAAGAGGATCCACAGGGGCATTTGCAAACTATTGGGAACAGTACTTTCTACTACAAGCCAAACATTTTCACAGACCCCTTCTTTGTTGTGGAAACCCTCTGCATCATTTGGTTCTCCTTTGAACTGATTGTCCGTTTTTTCGCTTGCCCAAGCAAAGCAGCCTActttaaaaacatgatgaaCACGATTGATGTAGTGGCAATCATCCCCTATTTCATCACGCTTGGCACAGAgcttgctgaagatgaagagggGAAGGAAGCAAAGGGAGGGGTGAACAGGCCACATCTCTAGCCATCCCTCAGGGTTATTCGCCTTGTCCGGGTGTTCAGGATCTTCAAACTTTCGAGGCACTCTAAAGGACTGCAGATTTTGGGGCAGACGCTGAAAGCCAGCATGAGAGAGCTGGGCCTCTTgatctttttccttttcatcgGTGTCATCTTGTTCTCTAGTGCAGTGTATTTTGCGGAGGCTGAGGAGAAGGAGTCCTTCTTCACCAGTATTCCGGATGCATTCTGGTGGGCCGTGGTCTCGATGACCACCGTGGGCTATGGCGATATGTACCCTGTGACCATCGGAGGCAAGATTGTGGGTTCCCTTTGCGCCATTGCTGGTGTGCTGCTCACCATTGCACTTCCGGCCCCGGTGATTGTGTCCAACTTTAACTATTTTTaccacagagaaacagaaggaGAGGAGCAGGCACAGCTCCTCAATGTGAGTAATCCCAACATTGCATCTGACTCCAACTCCAGTCGACGCAGCTCATCTATCATAAGTAAGTCGGAATATGTGGAGACAGACGATGACATGAATAACAGCATTGACAATTTTAGGGAGGCAAACCTGAGAACTGGGAACTGCACTATCTCAAACCAGAACTGTGTGAATAAGGGCAAGCTTCTGACAGATGTGTAATTGTTGCTCcacttttattttgaagaaaCAACA

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313042.1 True 1656 mRNA 0.48 4 16815760 16817420

Neighbor

gene id symbol gene type direction distance location
LOC113532119 LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172 coding downstream 44065 16769270 ~ 16771695 (-)
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding downstream 116304 16688373 ~ 16699456 (-)
kdm5a kdm5a coding downstream 130358 16663927 ~ 16685402 (-)
LOC113532402 LOC108279763,LOC108425342 coding downstream 153398 16649072 ~ 16662362 (-)
LOC113531895 usp15 coding downstream 168078 16622103 ~ 16647682 (-)
kiaa0930 kiaa0930,zgc:172139 coding upstream 245348 17062768 ~ 17099329 (-)
trnar-ccg_5 NA coding upstream 286145 17103565 ~ 17103637 (-)
LOC113532299 LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517 coding upstream 301926 17119346 ~ 17193239 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding upstream 444270 17261690 ~ 17316582 (-)
sapcd1 LOC108280126 coding upstream 617022 17434442 ~ 17439078 (-)
LOC117599589 NA non-coding downstream 196042 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 365994 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 519570 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 575859 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 733639 16078768 ~ 16082121 (-)
G284003 NA non-coding upstream 224207 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 689456 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 696190 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 704006 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 730912 17548332 ~ 17553258 (-)
alg12 alg12 other downstream 408897 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1631685 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5062847 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 5155433 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 5227736 11586304 ~ 11588024 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 21115 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 141092 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1161343 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1210314 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1251178 18068598 ~ 18082361 (-)

Expression


Co-expression Network