LOC117599463


Basic Information

Item Value
gene id LOC117599463
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19252823 ~ 19254197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313075.1
CAAATCATTAGGCTTTATTAAAGAAAGGGTTGCTGCTGAAAGTGGACCACTTCTGTTACAGTGTTGCATTATAGAAAACTCTGTGCAATGAAAACAATGACATCTGCTGCACTTTCATTCATACTTTTTCTCTGCTCTTTGAGCTACAGTTTGGCATCCAAGCAGCAGGATGTCTACGAGGATCTCTGGAATTGGAACGTGGACATCGCAAACAAGACTCTCCATGTCGACTTCCTGCAGCAAATGCAAACCAACAGCCTGCAAGCTGAGCGCTACATCAACTTCACCTTGCAGGACATCAACTATGTGCTAGAGGTTACCAATATGCTGAAGATGATGAGCAAGAAGGTCAGAAAACCGGAAGACATCAGAGACTTCATAACAGGAAGATACACAAGTTACAAGTCATTCTTGGACGTGTTACTTCAGCAATATTTCTTTAAGGATACCCCTCCTATCAAACCAACTCCAGCCATGAAGAAATATCTGGAAACTTACAGTGCGGTGATGAAGAAAGATCCTATCTACTTTGCTGTGGCTCTCCTGCCCTGCTCCAGGCTCTGGGTGTGGCTGGCTAACAATCTGAACATACCTGAAACCAATGCCTACTACACATGGAAAGTAGACAATATGGGTGGCCACCCTGAAAAGCATTACAAAGCTTTACTGAACAAATATCTAGACACAAATGAAAAGATAAATACTGCCAATGCGCTGTTCCGCAAGCAAATGCAGAATGAACATGACTTCTTTGCCACTTCTTGAGTTGATCATATTGTAAATTTGGCAGGCTTATCCTTTTTTCTACTCAACAGGTTTGTCCTTTACttgaattatataaatatgtttaattaacaaACAGTTCAACTCTCACAAAATTAGCTGCCACTTTTTTTATTGCCTttgtcattaatgttaatgatttaAGTGAGCAAAGTTCTTGTTTTAAGGCTTAagacatgttttcattttaaaatgtaacatttgtgtaattaaaaaagtatatattaaaatacttcataGTATGCCTTACTATGGA

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313075.1 True 1039 mRNA 0.39 3 19252823 19254197

Neighbor

gene id symbol gene type direction distance location
cdk17 cdk17,LOC107656329,LOC107658862 coding downstream 5460 19190496 ~ 19247363 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding downstream 91542 19140445 ~ 19161281 (-)
tfec tfec coding downstream 145397 19095392 ~ 19107426 (-)
ppp1r3aa NA coding downstream 464926 18781747 ~ 18787897 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 508661 18739775 ~ 18744162 (-)
LOC117599464 NA coding upstream 6516 19260713 ~ 19262044 (-)
LOC117599574 NA coding upstream 17398 19271595 ~ 19272694 (-)
LOC113531838 NA coding upstream 28953 19283150 ~ 19284499 (-)
mcm10 mcm10 coding upstream 60416 19314613 ~ 19335240 (-)
pparaa ppara coding upstream 81464 19335661 ~ 19355138 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 314728 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 329926 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 390671 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 421684 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 429623 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 34394 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 102363 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 150882 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 151706 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 154073 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 504990 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1040430 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1041119 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1160279 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1162201 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 424086 19678283 ~ 19735232 (-)
G285607 NA other upstream 1058870 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2206629 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3232039 22486236 ~ 22489467 (-)

Expression


Co-expression Network