LOC117599464


Basic Information

Item Value
gene id LOC117599464
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19260713 ~ 19262044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313076.1
AAAGAAAGGGTTGCTGCTGAAAGTGGACCACTTCTGTTACAGTGTTGCATTATAGAAAACTCTGTGCAATGAAAGCAATGACATCTGCTGCACTTTCATTCATACTTTTTCTCTGCTCTTTGAGCTACAGTTTGGCATCCAAGCAGCAGGATGTCTATGAGGATCTCTGGAATTGGAACGTGGACGTCGCAAACAAGACTCTCCATGTCGACTTCCTGCAGCAAATGCAAACCAACAGCCTGCAAGCTGAGCGCTACATCAACTTCACCTTGCAGGACATCAACTATGTGCTAGAGGTTACCAATATGCTGAAGATGATGAGCAAGAAGGTCAGAAAACCGGAAGACATCAGAGACTTCATAACAGGAAGATACACAAGTTACAAGTCATTCTTGGACGTGTTACTTCAGCAATATTTCTTTAAGGATACCCCTCCTATCAAACCAACTCCAGCCATGAAGAAATATCTGGAAACTTACAGTGCGGTGATGAAGAAAGATCCTATCTACTTTGCTGTGGCTCTCCTGCCCTGCTCCAGGCTCTGGGTGTGGCTGGCTAACAATCTGAACATACCTGAAACCAATGCCTACTACACATGGAAAGTAGACAATATGGGTGGTGACCCTGAAAAGGATTACAAAGCTTTACTGAACAAATATCTAGACACAAATGAAAAGATAAATACTGCCAATACGCTGTTCCGCAAGCAAATGCAGAATGAACATGACTTCTTTGCCACTTCTTGAGTTGATCATATTGTAAATTTGGCAGGCTTATCCTTTTTTCTACTCAACAGGTTTGTCCTTTACttgaattatataaatatgtttaattaacaaACAGTTCAACTCTCACAAAATTAGCTGCCACTTTTTTTATTGCCTttgtcattaatgttaatgatttaAGTGAGCAAAGTTCTTGTTTTAAGGCTTAagacatgttttcattttaaaatgtaacatttgtgtaattaaaaaagtatatattaaaata

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313076.1 True 996 mRNA 0.39 3 19260713 19262044

Neighbor

gene id symbol gene type direction distance location
LOC117599463 NA coding downstream 6516 19252823 ~ 19254197 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding downstream 13350 19190496 ~ 19247363 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding downstream 99432 19140445 ~ 19161281 (-)
tfec tfec coding downstream 153287 19095392 ~ 19107426 (-)
ppp1r3aa NA coding downstream 472816 18781747 ~ 18787897 (-)
LOC117599574 NA coding upstream 9551 19271595 ~ 19272694 (-)
LOC113531838 NA coding upstream 21106 19283150 ~ 19284499 (-)
mcm10 mcm10 coding upstream 52569 19314613 ~ 19335240 (-)
pparaa ppara coding upstream 73617 19335661 ~ 19355138 (-)
atxn10 atxn10 coding upstream 149786 19411830 ~ 19428263 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 322618 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 337816 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 398561 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 429574 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 437513 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 26547 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 94516 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 143035 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 143859 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 146226 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 512880 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1048320 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1049009 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1168169 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1170091 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 416239 19678283 ~ 19735232 (-)
G285607 NA other upstream 1051023 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2198782 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3224192 22486236 ~ 22489467 (-)

Expression


Co-expression Network