LOC117595727 (LOC108262260)


Basic Information

Item Value
gene id LOC117595727
gene name LOC108262260
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 663725 ~ 683075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313107.1
GTGGCTGGTGATGGTAGATGTGATCATCAGTGTTCCTGACTAAAATCTCAGtgCAAACTGCTGGGCGGAGATTACTGTGATTCCCCACCCGTACTGATTTAATAAGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTGAAGAACAATTTGATGCAGACCTCAAGGCAGATCTTACAGGAATCTGGTTTAAAGATGGCACTAACCATAACTATAACCAAGTCTTTAACTCCAAAGAAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGAATAGAAACTTcaggaaaactgaaaaacacttATAGATCTTCATCAGTAGATATAAGAGTGCGAGtCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCCCTCTAACCTCCTCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGATTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAATGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGCAAGACTGATTctacacacagtggtttataCTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatgctCCTCGGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATATGTTTCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCATGTCTCTGGTCAATATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCTTCATCTCCATCCGTCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGATCATCACTCTGCTAAAGatGCTCCTCAGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATGTGTTCCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCGTGTCTCTGGTCAAAATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCCTCATCTCCATCCATCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGCTCATCACTCTGCTAAAGgttCAGGTGTGGATATTTCCTCTGTGCTGATTGGTGCAGCTGCTGGAGCTTCAGTAATGATGATGTTGTGTGGTATATTcctgtgtgtaagGAGAGTGAGTCCTTCCCAGTGTGGACAAAGAGACACAGCAGGACTCGTTTTAAATGACAGGGCTGTTCGACAGGAAGAAGACGGAGAGTCTGTGTATGCGAACAAACAGGTTTCATCAGAGTCGCTTCATTACTCCACTGTTGTGTTTCCAAACAGAGATGGAAGCGAAATCAAAGGCATTTCCTCTCTCACTACCGAATACGCTACTGTGCATCACGGCTCCAAACAGCAAAATAAGGGAAGAATTACAGAAACTGGGGCTAAAGAAAGAGATATAGAGCATCTCAAACAGTCAGATGGAGTGTTTACACTCGGATGGCGTCCTTTAAGTCCTTTATAAGTTAAACCTCATAAATGTGAACAGAAGGTGTGAAAAAATCTCATTGTTTAGtaaaacgacaaaaaaaaaaaaaaaaa
>XM_034313108.1
GTGGCTGGTGATGGTAGATGTGATCATCAGTGTTCCTGACTAAAATCTCAGtgCAAACTGCTGGGCGGAGATTACTGTGATTCCCCACCCGTACTGATTTAATAAGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTGAAGAACAATTTGATGCAGACCTCAAGGCAGATCTTACAGGAATCTGGTTTAAAGATGGCACTAACCATAACTATAACCAAGTCTTTAACTCCAAAGAAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGAATAGAAACTTcaggaaaactgaaaaacacttATAGATCTTCATCAGTAGATATAAGAGTGCGAGtCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCCCTCTAACCTCCTCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGATTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAATGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGCAAGACTGATTctacacacagtggtttataCTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatGCTCCTCAGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATGTGTTCCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCGTGTCTCTGGTCAAAATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCCTCATCTCCATCCATCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGCTCATCACTCTGCTAAAGgttCAGGTGTGGATATTTCCTCTGTGCTGATTGGTGCAGCTGCTGGAGCTTCAGTAATGATGATGTTGTGTGGTATATTcctgtgtgtaagGAGAGTGAGTCCTTCCCAGTGTGGACAAAGAGACACAGCAGGACTCGTTTTAAATGACAGGGCTGTTCGACAGGAAGAAGACGGAGAGTCTGTGTATGCGAACAAACAGGTTTCATCAGAGTCGCTTCATTACTCCACTGTTGTGTTTCCAAACAGAGATGGAAGCGAAATCAAAGGCATTTCCTCTCTCACTACCGAATACGCTACTGTGCATCACGGCTCCAAACAGCAAAATAAGGGAAGAATTACAGAAACTGGGGCTAAAGAAAGAGATATAGAGCATCTCAAACAGTCAGATGGAGTGTTTACACTCGGATGGCGTCCTTTAAGTCCTTTATAAGTTAAACCTCATAAATGTGAACAGAAGGTGTGAAAAAATCTCATTGTTTAGtaaaacgacaaaaaaaaaaaaaaaaa
>XM_034313110.1
GTGGCTGGTGATGGTAGATGTGATCATCAGTGTTCCTGACTAAAATCTCAGtgCAAACTGCTGGGCGGAGATTACTGTGATTCCCCACCCGTACTGATTTAATAAGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTGAAGAACAATTTGATGCAGACCTCAAGGCAGATCTTACAGGAATCTGGTTTAAAGATGGCACTAACCATAACTATAACCAAGTCTTTAACTCCAAAGAAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGAATAGAAACTTcaggaaaactgaaaaacacttATAGATCTTCATCAGTAGATATAAGAGTGCGAGtCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCCCTCTAACCTCCTCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGATTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAATGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGCAAGACTGATTctacacacagtggtttataCTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatgctCCTCGGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATATGTTTCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCATGTCTCTGGTCAATATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCTTCATCTCCATCCGTCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGATCATCACTCTGCTAAAGgttCAGGTGTGGATATTTCCTCTGTGCTGATTGGTGCAGCTGCTGGAGCTTCAGTAATGATGATGTTGTGTGGTATATTcctgtgtgtaagGAGAGTGAGTCCTTCCCAGTGTGGACAAAGAGACACAGCAGGACTCGTTTTAAATGACAGGGCTGTTCGACAGGAAGAAGACGGAGAGTCTGTGTATGCGAACAAACAGGTTTCATCAGAGTCGCTTCATTACTCCACTGTTGTGTTTCCAAACAGAGATGGAAGCGAAATCAAAGGCATTTCCTCTCTCACTACCGAATACGCTACTGTGCATCACGGCTCCAAACAGCAAAATAAGGGAAGAATTACAGAAACTGGGGCTAAAGAAAGAGATATAGAGCATCTCAAACAGTCAGATGGAGTGTTTACACTCGGATGGCGTCCTTTAAGTCCTTTATAAGTTAAACCTCATAAATGTGAACAGAAGGTGTGAAAAAATCTCATTGTTTAGtaaaacgacaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313107.1 True 2221 mRNA 0.44 11 663725 683075
XM_034313108.1 False 1933 mRNA 0.44 10 663725 683075
XM_034313110.1 False 1933 mRNA 0.44 10 663725 683075

Neighbor

gene id symbol gene type direction distance location
LOC117599469 LOC108262260 coding downstream 93714 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 188510 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 269472 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 498984 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 555888 89473 ~ 107837 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 2961 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 222172 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 224155 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 492235 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 559063 1242138 ~ 1255186 (-)
LOC117599521 NA non-coding downstream 130107 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 132985 530099 ~ 530740 (-)
G275126 NA non-coding downstream 174803 487792 ~ 488922 (-)
G275141 NA non-coding downstream 215418 440793 ~ 448307 (-)
G275049 NA non-coding downstream 316276 347214 ~ 347449 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 20256 703331 ~ 704306 (-)
G275168 NA non-coding upstream 20695 703770 ~ 705100 (-)
G275169 NA non-coding upstream 25256 708331 ~ 718266 (-)
G275170 NA non-coding upstream 35370 718445 ~ 719883 (-)
G275178 NA non-coding upstream 63375 746450 ~ 750995 (-)
LOC117599510 NA other downstream 32338 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 34721 560707 ~ 629004 (-)
LOC117599533 NA other downstream 62696 597414 ~ 601029 (-)
LOC117599529 NA other downstream 76907 583198 ~ 586818 (-)
LOC113531866 LOC108279481,LOC108262260,LOC108279491 other downstream 106038 403961 ~ 557687 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 580674 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 599379 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 732830 1415905 ~ 1441145 (-)
G275420 NA other upstream 782784 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 904695 1587770 ~ 1627263 (-)

Expression


Co-expression Network