LOC113543469 (LOC108279491,LOC108262260)


Basic Information

Item Value
gene id LOC113543469
gene name LOC108279491,LOC108262260
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 686036 ~ 694483 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313112.1
TGTGGCTAAAGGAGAGCGTGAAACGTTACCACAAGACAAATTTCAACTATTGTTACAGTACAGATATTAAAACATtgcatatttacagtatatcagtatTGTACGAAAGGATTTTCTCGACTCCACCTCATGTGAGTGACCTTTTCTGACCCGAGATATGAAAGCTGCAGAGAAATTTGTTCTCATCTGTTGTTTGTTTCAAGgtgttTTGTGTAGAGAATTCTCCATCAGTCTACCAGAAAGTATAGAAGCTCTGAGAGGCCTCTGTGTTCTCATACCCTGCAGTTTTGATTTTAAAGAACAATATGATCACCAACTACAAAACAATCCTAGAGGAGTTTGGTATAAAGGTGACAGTTGGGCAAAACACAAAGTCTTTTCCTCCAAAACTACTGAAGGCAACAAGATTGATGGCAAAATTATAGGAGACCTATACAGGAAGAACTGCACCACCATTTTCTACAACATCAGTGAGAGTGACAGTGGAGAATATTATTTTAGAATAGTGTTTGGAaatctgaaatatatttatccttcttctctttatttaaatgttagagCTTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCAGCTAGATCTCCGTGTCCCTTCAACCCCCCTATTTTTACATGGAACTTCCTGTCTGAGGAGAGAAGACAGGAGCAGAACCACAACGCCAGATTCAGATCCTCACAGCTGAACTTCAAAGCCACTCGCCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGAACAAATCAGCACAGAGCTCTTTTAGACTACATGTTCTGTATGCTCCTAGAAACACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGcaagactgcttctacaaacagaGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGGGATCAGAAGTCGTCTGTGTATCTGGATGTTCTGTATGCTCCTCAGGTCTCTCCCTCCTCCAGCTGTAACAGTGCTCTGGATTTGATAATGTGTTCCTGTGAGGTTCATGGAAATCCATCTCCTAAACTGGTGTGGCACCTCTCTGGTCAAACTGTCCTGCCCTCTGAGAGCACACCCATCCGAGAGGAGTCTGTGGGTGACACGGGTTTAAAAAGCTTCATTACCATCCATCAGTCATTTATAGACACGCCCACTCTGCAGTGTATTGGCATCAATAAGCTGGGTGTTGACACACACCTGTTTAATCCCCTCAAAGCAGAATGCAGACATACAGCAGTATCTTACCTggttctgtctctttctgtggtTCTCCTTCTCTGTGTTGGTATTATTAGTTTTCTCATCTGCAAATTAAAGCAattatttggaaaaataaagGTACTTAAGAGTGGGAATGTTTATgcttctctccagctctctgctCCAAACACTTACGAGATTTTGCAGACTCACAGAGAAAGGAGACTACAAGAGAACAAAGTCTGATAAGCTGCACAAGCTTTatatgtttgtctgtttattgttCATTGCTGTAAATGATGTTTAAGTTTGTTGTGTGTAACATCCAGCCCAGACAATTCCCTGCCAGACTGCCAGAGGATGCCCTTCTGCAAATTTCGAGTGTTGTCTTCATTTGTCACAGTCCTGTTTTTTAGCTATAAAATCACATGGACCATAATTTCCCTGTGAAGCCTTATAGTTTGACTGTCACATATAAGTTCTGAGCTGTTGGTTCTGGATAGTTTATCTGTGTCTGACCCTGCCCTTTCTTGCCTCATCTCTGCCTTTATTTAACCCTCTGGATTTGATGTTGCCTCTGATTGTTTGGATCATTGACTTTGCCTGCCCTTTTGACCACATATTTTGGATTGTCTGTTGCATTGTGTTTGCTGGTATTTGACCTGGAACATTTTGACCAGTTTGATTTTGTACCAATAAATGTCTTGCATGTGGACAAATATAA
>XM_034313113.1
TGTGGCTAAAGGAGAGCGTGAAACGTTACCACAAGACAAATTTCAACTATTGTTACAGTACAGATATTAAAACATtgcatatttacagtatatcagtatTGTACGAAAGGATTTTCTCGACTCCACCTCATGTGAGTGACCTTTTCTGACCCGAGATATGAAAGCTGCAGAGAAATTTGTTCTCATCTGTTGTTTGTTTCAAGgtgttTTGTGTAGAGAATTCTCCATCAGTCTACCAGAAAGTATAGAAGCTCTGAGAGGCCTCTGTGTTCTCATACCCTGCAGTTTTGATTTTAAAGAACAATATGATCACCAACTACAAAACAATCCTAGAGGAGTTTGGTATAAAGGTGACAGTTGGGCAAAACACAAAGTCTTTTCCTCCAAAACTACTGAAGGCAACAAGATTGATGGCAAAATTATAGGAGACCTATACAGGAAGAACTGCACCACCATTTTCTACAACATCAGTGAGAGTGACAGTGGAGAATATTATTTTAGAATAGTGTTTGGAaatctgaaatatatttatccttcttctctttatttaaatgttagagCTTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCAGCTAGATCTCCGTGTCCCTTCAACCCCCCTATTTTTACATGGAACTTCCTGTCTGAGGAGAGAAGACAGGAGCAGAACCACAACGCCAGATTCAGATCCTCACAGCTGAACTTCAAAGCCACTCGCCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGAACAAATCAGCACAGAGCTCTTTTAGACTACATGTTCTGTATGCTCCTAGAAACACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGcaagactgcttctacaaacagaGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGGGATCAGAAGTCGTCTGTGTATCTGGATGTTCTGTATGCTCCTCAGGTCTCTCCCTCCTCCAGCTGTAACAGTGCTCTGGATTTGATAATGTGTTCCTGTGAGGTTCATGGAAATCCATCTCCTAAACTGGTGTGGCACCTCTCTGGTCAAACTGTCCTGCCCTCTGAGAGCACACCCATCCGAGAGGAGTCTGTGGGTGACACGGGTTTAAAAAGCTTCATTACCATCCATCAGTCATTTATAGACACGCCCACTCTGCAGTGTATTGGCATCAATAAGCTGGGTGTTGACACACACCTGTTTAATCCCCTCAAAGCAGAATGCAGACATACAGCAGTATCTTACCTggttctgtctctttctgtggtTCTCCTTCTCTGTGTTGGTATTATTAGTTTTCTCATCTGCAAATTAAAGCAattatttggaaaaaTAAAGGTACTTAAGAGTGGGAATGTTTATgcttctctccagctctctgctCCAAACACTTACGAGATTTTGCAGACTCACAGAGAAAGGAGACTACAAGAGAACAAAGTCTGATAAGCTGCACAAGCTTTatatgtttgtctgtttattgttCATTGCTGTAAATGATGTTTAAGTTTGTTGTGTGTAACATCCAGCCCAGACAATTCCCTGCCAGACTGCCAGAGGATGCCCTTCTGCAAATTTCGAGTGTTGTCTTCATTTGTCACAGTCCTGTTTTTTAGCTATAAAATCACATGGACCATAATTTCCCTGTGAAGCCTTATAGTTTGACTGTCACATATAAGTTCTGAGCTGTTGGTTCTGGATAGTTTATCTGTGTCTGACCCTGCCCTTTCTTGCCTCATCTCTGCCTTTATTTAACCCTCTGGATTTGATGTTGCCTCTGATTGTTTGGATCATTGACTTTGCCTGCCCTTTTGACCACATATTTTGGATTGTCTGTTGCATTGTGTTTGCTGGTATTTGACCTGGAACATTTTGACCAGTTTGATTTTGTACCAATAAATGTCTTGCATGTGGACAAATATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313112.1 False 2132 mRNA 0.42 10 686036 694483
XM_034313113.1 True 2132 mRNA 0.42 10 686036 694483

Neighbor

gene id symbol gene type direction distance location
LOC117595727 LOC108262260 coding downstream 2961 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 116025 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 210821 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 291783 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 521295 131691 ~ 164741 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 210764 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 212747 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 480827 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 547655 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 671628 1366111 ~ 1376319 (-)
G275134 NA non-coding downstream 6371 382925 ~ 679665 (-)
LOC117599521 NA non-coding downstream 152418 532826 ~ 533618 (-)
LOC117599492 NA non-coding downstream 155296 530099 ~ 530740 (-)
G275126 NA non-coding downstream 197114 487792 ~ 488922 (-)
G275141 NA non-coding downstream 237729 440793 ~ 448307 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 8848 703331 ~ 704306 (-)
G275168 NA non-coding upstream 9287 703770 ~ 705100 (-)
G275169 NA non-coding upstream 13848 708331 ~ 718266 (-)
G275170 NA non-coding upstream 23962 718445 ~ 719883 (-)
G275178 NA non-coding upstream 51967 746450 ~ 750995 (-)
LOC117599510 NA other downstream 54649 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 57032 560707 ~ 629004 (-)
LOC117599533 NA other downstream 85007 597414 ~ 601029 (-)
LOC117599529 NA other downstream 99218 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 146738 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 569266 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 587971 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 721422 1415905 ~ 1441145 (-)
G275420 NA other upstream 771376 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 893287 1587770 ~ 1627263 (-)

Expression


Co-expression Network