LOC117599468 (LOC108262260)


Basic Information

Item Value
gene id LOC117599468
gene name LOC108262260
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 422513 ~ 475215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313114.1
AAAACTGAGGACACTTCAGTTTGAGAACTGGAGACTCGAACACACTCAGtctctTCTCCAGGTGATCTTTCCTGAACAGAGAGATGAAATCAGCAGAGAAACTCATCATCAtcgtttgttttctgtttcaaggtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTAAAGAAGAATATGATGCAGACCTCCAGACAGCTCTTACAGGAATCTGGACCAAAGACGGCACTGACCATAAGAAAAACAAAGTCTTTAACTCTAAAGTAACTAAAGAGAACAAGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGATTAGAAACTTCAGGAAAACTGAAAATAACGTATACTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCTGCTCCAGCTCCATGTCCCTCTAACCTCCCCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACTACAGCACCAACTTCAGTTCCTCTCAGCTGAACTTCAAAGCCACTCACCTGCATCATGGAGTCGATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGGTCTTTTACACTACATGTTCTGTatgttcCTCAGGTCTCTCCCTCCTCCAGCTGTAACACCACTCAGGATCTGATCCTGTGTTCCTGTGAGGTTCATGGAAATCCATCTCCTAAACTGGAGTGGCGTCTCTCAGTTCAAACTGTCCTGCCGTCAGAAGCCACGCCCATCCAAGTGGAGTCTGTGGGCAACACGAGTTTAAGAAGATCCAGTGCGTTTTCCATCCCTCAGTCAGTTAAGGACACGCCCACTCTGCAGTGTGTTGGGTCCAATAATCTGGGCCACGCCTCTCAGGTCTTCTTTATAACTAAGGCTCAGAGGCCTGCTGAAGaacacactgcagtactttATCTggttctatctctctctgtggttctccttctgtgtgttggtgttattggATTTCTCATCTACAAATTAAAGCAATTGTCCAGGAAAATAAAGGTTCTACAGACAGGAGATACTTACgcttctctccagctctctgctGTACAGAACTCTGATTATGAAACTCTGCAGACTAACAGAGggaggagagaaaaaaaggacaacTCCTGAAAAGCTGCACTTTTTCATCACTTATTTTTCTGCCAGTAAAATAATTACCATTGAAGAATATTAAAGATATAaaggaatgtgctgttatacaatttatcagtttatagtcacatgtaatgttgtggaactttgatgaaacaagttagtttctgttcccagttacattatagcagttataaacttGTTTACATGCAAGTTAACTAATAATGTTTGGCTAACATCAGCATCAGTTAAATCACATGTTTGATATTTAAGTAGCTGATATAGCATTTGCATTAGCCTTAATTAAACCACATAATTGCtatttttacagtgtagctACCATAAACATTTGGTAAATCACTTAGTTGCTACTATAACTGCTGTTTTACTTTTAATGGGCCttgtttatatttcagtaaagttgtgttaatatttttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313114.1 True 1774 mRNA 0.41 9 422513 475215

Neighbor

gene id symbol gene type direction distance location
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 28260 376457 ~ 394253 (-)
cmah LOC108279485 coding downstream 257772 131691 ~ 164741 (-)
zdhhc17 zdhhc17,LOC102798393 coding downstream 314676 89473 ~ 107837 (-)
osbpl8 osbpl8,LOC107555879 coding downstream 372476 14021 ~ 50037 (-)
LOC117599469 LOC108262260 coding upstream 6359 481574 ~ 570011 (-)
LOC117595727 LOC108262260 coding upstream 188510 663725 ~ 683075 (-)
LOC113543469 LOC108279491,LOC108262260 coding upstream 210821 686036 ~ 694483 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 430032 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 432015 907230 ~ 907847 (-)
G275049 NA non-coding downstream 75064 347214 ~ 347449 (-)
G275024 NA non-coding downstream 129917 291650 ~ 292596 (-)
G275029 NA non-coding downstream 137282 250671 ~ 285231 (-)
G275028 NA non-coding downstream 141552 247323 ~ 280961 (-)
G274982 NA non-coding downstream 247815 168604 ~ 174698 (-)
G275126 NA non-coding upstream 12577 487792 ~ 488922 (-)
LOC117599492 NA non-coding upstream 54884 530099 ~ 530740 (-)
LOC117599521 NA non-coding upstream 57611 532826 ~ 533618 (-)
G275167 cpsf6,LOC108279496,LOC107729149,LOC107555887,LOC106576649,LOC106593552 non-coding upstream 228116 703331 ~ 704306 (-)
G275168 NA non-coding upstream 228555 703770 ~ 705100 (-)
LOC113531599 LOC108262260,LOC108279491,LOC108279481 other downstream 53476 354974 ~ 369037 (-)
LOC113535352 LOC107729140 other downstream 135461 281434 ~ 287052 (-)
LOC117599453 yeats4,LOC107555875,LOC107590554 other downstream 168668 248336 ~ 253845 (-)
G274979 NA other downstream 276473 144583 ~ 146040 (-)
LOC113532194 far1,LOC108279482,LOC107590516,LOC103366393 other upstream 39769 514984 ~ 525025 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other upstream 61231 536446 ~ 539298 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other upstream 85492 560707 ~ 629004 (-)
LOC117599529 NA other upstream 107983 583198 ~ 586818 (-)
LOC117599533 NA other upstream 122199 597414 ~ 601029 (-)

Expression


Co-expression Network