LOC117599470 (LOC107667668)


Basic Information

Item Value
gene id LOC117599470
gene name LOC107667668
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1175310 ~ 1177234 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313122.1
GCTTCATCACAGAATTTACTCACTTTTTTCTGCGCGTTTGGATGATGGTACGCTACACGGGTGAAGAAGCACTCCGGCTGGTTCTGGACAGCGACGAAGAGATTACTTTCTCCTCAGAGGAAGAGCGCGACTCGGATGACGAGCGTTTGCATTTTGAAGAGTGAGTGGACCCAGCAGAGGATATCAGTCCTGACGAGCCATggactgtcatgtgatgctgtgacATCTCTGTTGGACCGTAGAGTTTTGGGCTCTGGGTACCATGTATACATGGATAATTTTTACACTAGTCCCAAGCTTCTAACAGACTTGTTTGCTTTGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGAAAGGATTGCCCTCGGAATGCAGCTAACTCACTCACCAAAAAATCTGTGAGGGGCTCCATCAGGTGGATTCGAGATGGACATCTTGTGTTTGTGAAATGGATGGACACACGAGAGGTGTCTGTCTGTTCCACCATCCATGCTGCTCATACAGGAGACACTGTGCAGAGGAGggtgaaaacacaaaatggaTGGAGGACAAAGAGTTTTCCATGTCCTGCACCTGTGACTGCATACAACCAGCACATGGGGGGTGTTGACCTGTCTGATCAGCTGttacagtactacaccacacagCACAAAACAATGAAGTGGTACAGAAAGCTATTTCTACACTTCTTGGACATTGCTGCCACCAATGCCTTTATTGTACACAAAGAGCTTTACGGCACCATGAGCCACAAGGAGTTTATGGAAGAACTAATTGCAGAGCTCTGTGGCGTGTCACAGAAAATAACACCAAAGCGGACCAGTGTTGACCATGTGCCAGTTCCAGGAGCTGAGCAGGCCTCAGATGCCACTGCTGGTCGCCGGATCTGTGTGCTTTGCAAAGCAAAGCATGGTAAGAGGCAGGACACTCCTTGGAAATGCCAGGCATGTGATGTTCACTTGTGTGTTCAGCTGAAAAGGAACTGTTTCCTAGAGTGGCACAAAGATGTATAGCTGTATAGATGTATAGCTGTTCAATTCTGTGGGCTTCAAAGAGTGGGCTTTTACTATAttctaaataaactacaaacaaaaaatatataaatttcttttgtcctcacaTTCTTTTTCATAGCACTTCCCTCTCAGCCACATTCCTGACTCAACGGCTCATTATGCAGGTCATTATGCGGGTCTTTGTCTTCTTAGGTGTCAATCACATTATTATTCGTGATCATTCACGCCCTCTTGCATATGCCCTTTcgaaacaaaaagtgtcttagaaaatttaaataagtaTATTGTTTACTGTGAATGAGTGAACAAGATGATTATCACATCATTTTGATGCAAAAAATCTAGGCTACAAGATCCAGTTCTCGAAAGTCTTGTGAACCAATgttctgtatgtgttttatggccttatttcagtgacttaaaaatgttagtttttCACTAACCACGCATAAACGCTGTTTtctcaaaaacacaatcatgtatAAACATGTTGCTCACATATTATTGTAGCCCAGTTTGTGCTGATTACAGTATTATCAGACTTTAGCcattaatgtttaaaagcaactgaaaaaagcacaaatgtcaGGGCATGTCAAAATTTGTCCAGGGCCCCAAAACACCCTCAGACCCCAGAGGGttaatggtttttgttttgttgatttttgttggTGAATGCAGGTTTTGGAGTCAGTAAATCTTTTGTATTGATTGCAAGcagtgtctcctgccttttGCTCTGGTCATGTCCCCACATtgagagtagaatagaatagaatctttattgtcagtgtacaagtacagtgaaatttggTTTGCAATtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313122.1 True 1845 mRNA 0.43 2 1175310 1177234

Neighbor

gene id symbol gene type direction distance location
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 267463 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 268580 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 480827 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 492235 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 605299 481574 ~ 570011 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 64904 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 188877 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 210962 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 214666 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 233897 1411131 ~ 1411615 (-)
G275393 NA non-coding downstream 26546 1145605 ~ 1148764 (-)
LOC117599494 NA non-coding downstream 42741 1132088 ~ 1132569 (-)
LOC117599477 LOC108279477 non-coding downstream 273470 900773 ~ 901840 (-)
LOC117599491 NA non-coding downstream 297056 877038 ~ 878254 (-)
LOC117599484 NA non-coding downstream 304835 869990 ~ 870475 (-)
LOC117599532 NA non-coding upstream 64133 1241367 ~ 1241904 (-)
LOC117599476 LOC108279477 non-coding upstream 84408 1261642 ~ 1262710 (-)
LOC117599498 NA non-coding upstream 114931 1292165 ~ 1293976 (-)
G275408 NA non-coding upstream 209318 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 219205 1396439 ~ 1462056 (-)
LOC117599510 NA other downstream 543923 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 546306 560707 ~ 629004 (-)
LOC117599533 NA other downstream 574281 597414 ~ 601029 (-)
LOC117599529 NA other downstream 588492 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 636012 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 86515 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 105220 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 238671 1415905 ~ 1441145 (-)
G275420 NA other upstream 288625 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 410536 1587770 ~ 1627263 (-)

Expression


Co-expression Network