LOC117599471 (LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265)


Basic Information

Item Value
gene id LOC117599471
gene name LOC108261384,LOC108279477,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108261932,LOC108261610,LOC108262265
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2482383 ~ 2548694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313123.1
ctgtcaactgcagctccggggaacagctgtacatcacctgctcagGTATCTTTAACCCCGCCCACAGCTCCATCAGGCTGGTTGGTTCTGGGGGAGACTGTGCAGGAAGGCTGGAGGTTTTCCACAGCGGCTCGtgggggacagtgtgtgatgactcgtgggatattgaggatgcgcaggtggtgtgcagacagctgcagtgtggagaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctgaatgaggtggagtgtgaggggaacgagacgtccctgtggaactgcagatttcagctgtgtgaagagGGAGAATGTGGACACCAGGAGGACGTAGGAGTCGtgtgctcagagtttaaagagatccgactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggtaatgtgtgtcacaatcagatggatgatgagacagtaaacatggtgtgtcgagagctgaactgtggaagAAGTGGCAGTCTGTCAAACACTGAAGCACGAGTAAAATCTGCTCCTAACTGGCTGGATTATCTGAAGTGTAGGAAACACGACTCTAATCTGTGGCAGTGTCCATCTTCACCCTGGGGACAGAACAGCTGTGATAATCGTGATGAGGTGGCTCATATTACCTGCACAGatgaTGGAAAGTCTCTACATACACAAGAAAAGTGCTCTTCATTTCCCTCTCAGAAACATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctctgggaggttggaggtgtatcataacgctacgtggggctccgtttgtgatgatcagtggaacatcaggaacgctcaggtggtgtgcagacagctgggctgtgggtcgGCGCTGAGTGCTGATAGGAATGTTTCGTTTGGTCCTGGTGAAGGGActatctggctgaacagagtgaagtgtcgaggggatgagattcacctgtgggactgtcatcattccctgaagaaacacactgactgctctcatgctggagtcacctgtgcagACCCATCAGTGCCGAGCACTATTACACCCACCTCAacaaccacctccaccaccaaaACAGTAAGAGCCGCTTCAAATCCCACATCACCTGGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgcttctgctggtactgttttaccagaacagagtgctcaggagagttgtctctaagaggaggcgtaagactcagcctgaggcagtctatgaggagatcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313123.1 True 1307 mRNA 0.52 8 2482383 2548694

Neighbor

gene id symbol gene type direction distance location
LOC117599505 NA coding downstream 27302 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 53442 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 67190 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 101049 2379889 ~ 2381334 (-)
LOC117599435 NA coding downstream 109079 2371624 ~ 2373304 (-)
LOC117599438 NA coding upstream 79971 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 115703 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 119661 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 123327 2672021 ~ 2678032 (-)
pawr pawr coding upstream 656594 3205288 ~ 3246996 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 22271 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 23542 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 45316 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 72279 2377505 ~ 2410104 (-)
LOC117599509 LOC108261384,LOC108261932,LOC108279477,LOC108261610,LOC108261705,LOC108261515,LOC108262337,LOC108261554 non-coding downstream 98925 2381342 ~ 2383458 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 83732 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 286006 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 431143 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 669025 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 669495 3218189 ~ 3219050 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 370435 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 413254 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 420263 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 442321 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 855120 1587770 ~ 1627263 (-)
G275981 NA other upstream 593840 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 677901 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 750563 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 881496 3430190 ~ 3494016 (-)
G276075 NA other upstream 988303 3536997 ~ 3538743 (-)

Expression


Co-expression Network