LOC117599536 (itih5)


Basic Information

Item Value
gene id LOC117599536
gene name itih5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13751523 ~ 13763790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313141.1
ATGAAGCAATGGTACAATAGCCAGACTCATGCTGGTGTCCAATTCACCTGGCTAATCCGGGTCCTGGGGCCAGTATCTGAGACCAGAATTACTGTGTCCCAAATCGATGGGTGTGGTCCAGTCACCAGTCATTTTGGGAAATGCAAAGCCGCAGAGAGAAGTTCTGCATCTTTACCATCGGATGGGAAACGAGATCTGACTATAGAAAGCTTCGTTGGAGCGCATGGCGCTGGAGAACTGTGGCACCATGAGGAGAATTCGGAGGATGCTGATGCTAGCACCATGCTGAAAGGATTCTACGCAGAAATCGGCACCCCTCTCCTCTCGGACATTAGGTGTTGCATACAGATGATGCCGAGAGAGTATGTCACACAGAACCACTTCCCCAATTATTTTAATGGCTCTGAGATCATCGTGGCTGGAAAGCTGACCAATCGTAGCTCAGATTCCCTCCATGTGCAGGTGACAGCCAGCAACAGTGATCGCAGCCTCGTAATGGAGAAGGACATCTCTCTGAGTGGGCAGGAACGTGAAACAAAGCGGCGTGTGGAGGAGGCTGAAGCTGGACCAAATGCAGATGGCTATGTTGAGCGTCTCTGGGGCTTCCTGAGTGTGAAAGATGGACTGAATGGAAGATTACGCAGCCACACGAGTTCAGAAAGAGAGAACTTCACTCAACGTGCCACTGAACTCTCGCTATCTTACAACTTCCTCACGCCATTAACACAAATGAAGGTGGAGACACCACAAGTTCTCGCCGATGGAACTATAGCGGAGGCTGAGCCTACAGAAGCTCCATCTGCACACTCAGATTTGGCCAATCAGTTAGCAGAGGAGGAGCCGATGGGAGACACGCCCCAAAGCCTGCACAGGAATAAGGAACAGCCAGCAACAGTGCCCATAGCTGGCAAGGCCACAAATGGACTTAAAAGACCTGGCAAAAAGTCTGTCACCCTATCCAAAACATCAGCGGATGGAGATCCTCACTTTGTGGTTGACTTCCCCCTCAGTAAACTTACTGTGtgttttaacattaatggagAGCCTGGGGATGTCCTCCGCTTAGTGACCGACCACAAAAACTCTGgtgtaaCTGTAAACGGGAAGCTGATTGGTGCTCCAGCACCCCCTGGCAGTCACAAACAGCAGCGCACATATTTTAGCTCCATCATTATTGTTGTTGACAAGCCAAGGCGCTCGTACATCGAGGTGACGCCACGTAAAGTCATTGTGGATGGCCTTGATCGCCTCATCCTTCCCTGCAGCTCCAGTGTCACTGTGGATAACAAAGATTTAGCAGTGGCTATAGTTGCTAACGCCAATGTTACAGTTACCATTCAGGGAACAATCCAATTCATCATCTTGatgcacatttataaaaatccTGCTCCTTACCAGCGAGACCACCTGGGCTTCTACATAGCGGACAGCAAGGGACTGAGCAAGGACACACACGGACTGTTAGGTCAGTTTATCTATGAAGAAGTCACACTAACACAGTTTCCTGGAAACATCACTGCAGCTACAGGAAATGACACACAAGAAATAAGCATTACCCAGACTAATCCTGAGGCTGGTCACATGGCCCTGCAGGTGAAGGAGCGCACTGTGGACGTGGTAAAGAAGAGCAGACATATTTACTCTGGGACACACACCGTCCACTGCTGGTTTGCCAAGAATAACGCTGCTAAACTGATCGATGGACAATACAGGGATTATGTAGTGTCTCACATGTTTGACACAGAAGACTGGCCTCACGGGACAAAtgcacactgagacacacacaatcacagaaTAGCACAACCGGT

Function

symbol description
itih5 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within hyaluronan metabolic process and negative regulation of peptidase activity. Predicted to be located in extracellular region. Orthologous to human ITIH5 (inter-alpha-trypsin inhibitor heavy chain 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313141.1 True 1808 mRNA 0.49 8 13751523 13763790

Neighbor

gene id symbol gene type direction distance location
sfmbt2 sfmbt2 coding downstream 26893 13665323 ~ 13724630 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 103326 13621297 ~ 13648197 (-)
LOC113532074 NA coding downstream 202020 13532919 ~ 13549503 (-)
acot18 LOC108279984,LOC108261735 coding downstream 229200 13509232 ~ 13522323 (-)
lamb1b LOC108279853 coding downstream 249702 13466202 ~ 13501821 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding upstream 18972 13782762 ~ 13787434 (-)
LOC113531720 itih5 coding upstream 44619 13808409 ~ 13829508 (-)
kin kin coding upstream 87753 13851543 ~ 13858673 (-)
LOC113531970 LOC108279954 coding upstream 1110060 14873850 ~ 14885572 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding upstream 1268858 15032648 ~ 15047471 (-)
LOC117599591 NA non-coding downstream 176148 13571800 ~ 13575375 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding downstream 187577 13559259 ~ 13563946 (-)
G282060 NA non-coding downstream 323651 13427657 ~ 13427872 (-)
G282047 NA non-coding downstream 342197 13407613 ~ 13409326 (-)
G282006 NA non-coding downstream 378475 13320173 ~ 13373048 (-)
G282279 itih2,LOC107555817 non-coding upstream 69458 13833248 ~ 13837431 (-)
G282283 itih2,LOC106576198 non-coding upstream 74868 13838658 ~ 13840594 (-)
G282349 NA non-coding upstream 173866 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 190209 13953999 ~ 13969897 (-)
G282404 NA non-coding upstream 569142 14332932 ~ 14333132 (-)
dusp16 dusp16 other downstream 1998610 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 2091196 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 2163499 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2492111 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2657347 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1376135 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2637131 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3074745 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3194722 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4214973 17978763 ~ 17988280 (-)

Expression


Co-expression Network