LOC113531875 (LOC108279736)


Basic Information

Item Value
gene id LOC113531875
gene name LOC108279736
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21174184 ~ 21179511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313152.1
AATAAAAGCAGTGACGTGAAAAGCACACACCTGTGCACACGGCAAACTttaaagaagaacaagaagagcaagaagagcaagaagaagaaggcatCTGTCTGCAATAATGGCTAAACATTCCGCTGTAGATCAGGAGCTTTCAGCAATCCTGAATGAGTTGTGGAAGCTGGACGTGAACCGTGTGAAGCCAGGAAAAGACTACACCATCAATCTACAGGGGAAGGCTGATTATGTGGCCCAGGGCAGTAACAGTGCCAGAGACAAAGCCAGTGCTCCTCTGTTCACATACGTCAATGAGGATAAACTCAAAAGCATTGCCACATATGCTAGCTTCATAAAAATCTTGGACAACTACGAGATGTCCACAGGTGTGGCGGAGAACGTGACTAgtgaggagctggaggagaatAACATCTTCCTCAATGCCATCCTACAGACCCAGGTCATGAAGCGTGCACATGAGTATTTAGTCAGTAAAGGACAAGCCTCCTCTGACGTAGCTCAGTTTAAAAAGCAGCTCTTTGACATCTGGTTCAAACTCTAtcacagagacagaaatggaggTGAAGACTCATGTGGATTTGAACATGTGTTTGTTGGTGAGACTAAGCATGGGAAAAAGATCATGGGCCTTCATAACTGGGTTCAGATTTACCTGCAGGAGAAGCTGAACTGTATAGACTACAAGGGCTACAAAGCCAGAGATAAAGACATGCCAGATGTGAACGATCACGTCATTAACCTGCAGTTCAGCTGGAAAGGCCTGGTGAAGCCAGTGGGCAGCTCCTTCATTGGCGTTAGCCCAGAGTTTGAGGTGGCACTCTTCACCATCATCTTCCTCAAGAGTAATGAGCGTGTTACCAACGCCGTTGTCAAAGTGGACGAGTACATGCTGGAGGTCGTGGTGTGTCGACATGGACGTGCTATTGGAACGTCCTACCCCAAACTGCTCAGCAGCAACAACAGGGATCTGTAGTTTCCCTACTGAACAGGTTGTAAGGATTTAAGTTTCTTCTGTATAGCCTTATAATCTGCACCGTTATTATAAGCAATAGCTCTTAGTTTCACAAGCAACATTGAGTCTTTACATTAAAATTGGAACTGTTTAC

Function

GO:

id name namespace
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313152.1 True 1109 mRNA 0.45 7 21174184 21179511

Neighbor

gene id symbol gene type direction distance location
si:dkey-222f8.3 LOC108279736 coding downstream 1924 21164706 ~ 21172260 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding downstream 40691 20939745 ~ 21133493 (-)
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 279554 20792473 ~ 20894630 (-)
mkrn1 mkrn1,LOC107725576 coding downstream 444547 20715040 ~ 20729637 (-)
tmem121b cecr6 coding downstream 461265 20709969 ~ 20712919 (-)
ppfibp1a LOC108279739,LOC108426406 coding upstream 10414 21189925 ~ 21226343 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding upstream 424389 21603900 ~ 21630503 (-)
ints13 asun,LOC107733003,LOC107589038,LOC107738827 coding upstream 552078 21731589 ~ 21751582 (-)
cog5 cog5,LOC107656447,LOC107583928,LOC107658957 coding upstream 582170 21761681 ~ 21782085 (-)
slco1c1 slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 coding upstream 617394 21796905 ~ 21842435 (-)
G286192 tnnt2c,LOC107560724,LOC107655611 non-coding downstream 11264 21104808 ~ 21162920 (-)
G286212 NA non-coding downstream 31496 21141474 ~ 21142688 (-)
G285934 NA non-coding downstream 243264 20928521 ~ 20930920 (-)
G285911 NA non-coding downstream 268526 20905423 ~ 20905658 (-)
G285907 NA non-coding downstream 277697 20896281 ~ 20896487 (-)
G286272 NA non-coding upstream 55671 21235182 ~ 21235425 (-)
G286301 NA non-coding upstream 124744 21304255 ~ 21304529 (-)
G286305 NA non-coding upstream 229533 21409044 ~ 21409298 (-)
LOC117599448 NA non-coding upstream 312130 21491641 ~ 21492712 (-)
G286337 LOC107739129 non-coding upstream 316866 21496377 ~ 21496619 (-)
G285607 NA other downstream 854134 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1438952 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 2426351 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2961791 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2962480 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 281315 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1306725 22486236 ~ 22489467 (-)

Expression


Co-expression Network