kdm7aa (kdm7a)


Basic Information

Item Value
gene id kdm7aa
gene name kdm7a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3919302 ~ 3945301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313185.1
CGTCGACATTTAAACTTCGCCCTCGGATGAGGAGAGCAGGCAAGATGGCGGCTGCCCCGCTGTACTGTGTGTGCCGGCAGCCTTATGATCTCAATCGCTTTATGATCGAATGTGACATTTGTAAGGACTGGTTTCATGGAAGttgtGTGCAGGTGGAGGAGCATCATGCTGCTGATATCGACGTCTATCACTGTCCTAACTGTCATCCCATCCACGGACCCTCcctcaTGAAGAAGAGGAATAACTGGCACAGACACGATTACACAGAGGAGGATGATGGGAGGCGGCCGGTTCAGGCTGGAACAGCCGTCTTCATCCAGCAGCTGCAGGCCAGGAGCTTCCCCAGTGCTGATGAGATCGTGGTGCGGATGCAGGGAAGTCATGTGACACGGCATTACCTGGAGACCGAGGGGTTCGATTACCCCATCATAGTGCAGGACATGGAGGGTCTGGGGCTCAGACTGCCCCCACCGTCCTTCTCCGTCAGAGACGTCCAGCACTACGTcgGTGGAGATAAAGTGATCGACGTGATCGACGTGGCCAGGCAAGCGGACAGCAAGATGAAGCTGAGGGAGTTTGTGAAGTATTATTACCAACCTGAACGTCCCAAAGTGCTCAACCTCATCAGCCTGGAGTTCTCCGATaccaagatggcTGAGCTGGTGGAGGTGCCGAAAATCGCCCGTGAGATGTCGTGGGTGGAGAGGTACTGGCCGGACGACTCCATCTTTCCCAAGCCGTTCGTGCAGAAGTACTGCCTGATGGGGGTGAAGAACAGCTACACCGACTTCCACATCGACTTCGGAGGAACCTCCGTGTGGTACCACGTCCTCTGGGGAGAGAAGGTTTTCTACCTGATCGAGCCGACCAAGACCAACCTCGCACTGTACGAGTCGTGGAGCTCGTCGGCCAATCAGAGCGAAGTGTTCTTCGGAGAGAAAGTGGAAAAGTGCTACAAGTGCGTAGTGAAGCAGGGCACCACCGTGCTGCTCCCTACAGGTTGGATCCACGCAGTTCTCACTTCTCAGGACTGCATGGCCTTCGGAGGAAACTTCTTACACAACCTAAACATCAGCATGCAGCTCAAGTGTTATGAGATGGAGCGGAGACTGAAAACTCCAGATCTGTTTAAGTTTCCGTATTTCGAGGCCATTAGCTGGTACGTGGCCAAGAACCTGCTGAAGACGCTGAAAGAGCTGCGAGAGGCTCAGCGTCAGCCTCAGGAGTATCTGGTAGAAGGAGTGAAAGCTTTAATCTCTGCGCTGAAGACGTGGCTGAGGAGGGAGTTAACGGCACCAAACAGCGAGGTTCCGGATCACATCCGGCCGAGTCTCCTGATCAAGGAGCTGAGCAGGGAGATCCGTCACCTGGAGGTGCAGGAGGAAGATCCGAGTAAACCGGTGAAATCTCAGGGAAGCGCAGAAAGCCCGTCCGGTCGTTCCTCGCTCGAGAGGCGACGCCAGGCGCAACAAGTCGCTCGAAGACTCGGAGACCATCATcgtcatcaccaccaccaccaccaccatcatcatcatcttcatcttcagcatcagcatcatcacGAGCCCAAACTCCGATCAAACCTGGACATCCTGGAGCTGCACACTCGGGAAGTGCTGAAGAGGCTGGAGGTCGGCCCCTGGAGGAGGTAAGATCACCAGGACTCACACGTGAGCTCCAAGGTGAACAGGAAGTTTAAGAAAGTTGTCCAGACATCTGCCGTGACCGTTGAGGGTAACCATGACAACGCGCTGCGATTGGTGCTGTGTAACGGCAGAATCATGTGTGAGAGGCTGCGTCTTGGGAACAGAGCTCTGAAATCTGAGAGAGACGAAACATCGCCATGCCAACAGCACCACGTTAGACCAGAAAAGCCATCGTCATGCCAAcaagagaaagtgaaagtggAGGCGGGGTTACAGTGCGTGGGTCAGGTCACTCATCATGAACTCAGGATAAAGCTGACGAACCTCTCAGGGTTGcagaaggaagaggaggaagatgatgatgaagatgaagaggagCAGAAGGACAGTTCAGATTCAGGGAGCtctgaggatgaagaggagTGTGAGATGCCTAAGATGAGAAACTCAGGGAGTCAACATCACAAACCACTCAAAagGGAGCGTCCTTCCTCCCCCAGCAGGGTACCAGAGGGAGGCGCTGTGACTCAGGAGATGTGGtggagcagcagcagtagcagtagcagcagcagcagcagcagcagcagcagtagcagtagcagcgcAGTGTGTGTCAGCAGTAACACGAGTTCAGTAGAGGAGTGTTTATACAGTGACAGTTCACTCTCTCCTGCACTCCATCCATCAaaacgacacacacacaactccagCCCCATCAGCAACCAGGCCACTAAAggaaaacgTCCGAAGAAAGGCAATGCGACGTCCAAGCAGAGGCTGGGCAAGCTGATGAagatgagcacacacactcgaCTGCTGTTATAACACGACAGCgacacacacatctcactacctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaactcgTACCTTGCATGTTTAAGCTCCAAGGTATGTAGGAATGGCACTAGCACGCTGATGCTGCACGGCGGATAATTCACGGCACACATGCTCTGGGAAATTAAGTGATGatttaacagataaaaaaatttatttaaaaaaaaaaacaaaaaaaaaaaaacagcagtgcaGGGAAATTTGTGACGGAAATAGCCAAATGTTtatggaagtgttttttttttgtgtttgtttcttctgCAAGTGCAGTGGATCAATACTGCTAACACGCCCTTGCTCACTTTGAAACGTGGTTCGAGCCCCAAGAACATGATTTTTCAGAAAGTGATATTTGcgttattacaatattaaaccaaaatccattattttgtatttgatcTCTTTTTAAACTTCCAGTCAGATCTGAAAAAAAGTCGTCCCATAGTTTCTAAACGTTAACCCGACTCAACTCAACGGAAGCTCCTGGGTACCAGCTGTGAGTATTTATAATCATACTAACacgttttaataataattctgaaaaTCTCAACGATTAAGTGTTCCCTGAAGTGTCTATGAATTGAAACTTTAATCTGTGACAGTCGCTTGTTTAGttaaggtttaaaaaataaaaataaacacttttccaGAAAGGTTTTCCAGCTGATCCTATCAGGTGCTAGGTGTTAAATGTTTGCTAGCTAAATTAACTAGATAGCTAGCAgttgttttaattttctttgaACTTTCTCACAATTTATAGGCTGACGTTGCGATATTGATGTGTGATCGAAAAGAGAACTTTTCCCGAGTTAACGTtgcaaaatgaagaaataaacgTATTATCGAAACTCGTTTCATAAATTTGGCTATCAGTATCGGTTAAGTCTCGCTAAACTGTTTTTAacttataacattaaaactaacaAGTATCATTAGTCAATTACAGTCAATAACAAATTATGCCCACTTTTGTCTTTGCAAATCATATTTCTGGACAAACTTGTAGCAAAATTACAAAggagaaatgtttatttcacgTAAAAGGTTGCGTAGCGGACATTCTTGAATTTTTCTCATTAAATTTCTCAGCCTACGTTGCGATATTGATGCGTGATCGAAACGAGAACTTTTGCTTTCCCGAGTTAACATTGAGAAACGAAGAAACATAAACGTATTTTAGTAACTTGTTTCATTTTATGGGTATCGGTTACATTTTACCAAACTGTTTGTATTAAAACATGTAAACTAGCAGCCATTATCAGTCAGTTACGAACAAATCACGCCTATAACAAATTCTTACAGATCATATTTCCGTGCAAATTTGGTATTTTAGTAACAATTCTGAAAATGTTAACGATTAAGTGTTCAGTGAAGTAGGAACAAAGAAACCGATAAGAAATTATAAATCGCGTTGCTTTATAAGGAAGGCGACGCCTCCTGAGTCCAGTGACAGTCCTgcgattgcatttcagtgtagcACGACTGCAACGcagtgatgaaagtgaaatgcagtgAAACAGGAAATTACATTCACTTCAGACCAGCGtcagtgtttcattctttaaaaagCGGCTccctgctgattgtttttcactgacGACGTAAAGCAACGTAAGAGCAATGCAGTCAAGggtttgcttttcagtgtagcACGTTTTCCTAAACGGAAAAATAATACCATTTCACACTTTCCTCCAGTATGATTGGTCTTCTGTTTCACACGGAATTTTCATCATCGTGTTTAAGCCCACTttgattaaaaattataataataacaataataataattagcaatAATGCTATTAATGCTCCGAATGTAACCTTTTTATGTAACAGTGTGAAGGTAACTACTTTCTAAAACATTTATCTGAACAATAGATGTAACACTAGTAACCCTGTACACGAGGTGCGTTAACACCCTTAACGACCTGAGCgttaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgatctGGCAGCTTTATTACTAATGAGTTCTGTAGCATTAACACATCTTCACCTGTTTTTAACATCCACCATCTAATGAGATTCCCGGATGTAAAATACTGAGAGACGGCGTTGTgcgatgaagtggagttactgctaccactctgaagttgattattttcctataacagcatgcccccaagtgttttattcctcttataccacagcaacttaccgtcaattacaatttataatgtactgaaaaacaacaaatcagtgttttatccatttttcgTTACATTGAACGTTCTCAgttaccttatagcagctataaacactcgttctctctctctcttttttttgctctttcttgaagttaatgagacaaaacagtaacgcagcttgtcgtcttatgttactgagaaaccgtaaaactcctctttcctgaaaGCTTAAAGGAAAGGAACGGTGCTTAAAGTGAACAAGGGCGTGTCGGAAACGGTATTGGAACACAGCCGGAGTGTGTtatccattcagccaatcaCGGAGCTCTGAGTCTACATTGTGTACATTGCAGTCAgcttctctttccctctcctaCCTCCACATTCAACCTGTAGCAgaagcagaagtgtgtgtgatgtttcttGGGCAgctttcatatgtttttttttttttcttctgtaaaatAATCTGATTATTGCGTCTCATTTCTCTACTTTTAACGTTGATCACTACCTTCTTCCTGTTCGGCTGTGGCGTAAACACCGAGGGTCGGTGTGATGAGAACGATGCTCGGTGTAGTTCAGGGTAATTTATAAATCTGTGTGATAGTTTTTAAACGGTGCTGAAAGCAATAATTGTACAGTGTTTGATTAGATGATTGAtgattggttgtttttttttttcccaatatatatttaaacaggCGAGATTTGTAGCCATTGAGTATTTCCATTCTTTAACACTGAagtctattttattttctgttaatttgGCCGAGTTATTTAGTGGGGAGGATGCACTGGAAGAAATTTGTAGCAAAATTACAAACGTTAAATTGTCGTTAGGGGGCGTTTCCCAATCATTTTGGTGCTTTCTGGTTGTTGGATTTTTTGATTGAACTGAATCTGACAGTCACTTGGGTAgttacgtttaaaaaaaaaaaaaaaaaaactcttcaagCAAGGTTTTCTAGCTGATGCTATCAGGTGCTCATATTAGCTAGGtttacagttagctagctaaattcgTTAACTAGATAGCTAGCAGTTATCCtaattttatttgaactttCTCACAATTTACAGGATGACGTCGTGATATTGATGTGTGACCGAAAAGAAATTTAACGTTGCAAAACgaagaaacaaaatattttcgTAACTCGTTTCATAAATTCAGCTATCAGTATCAGTTAAATCTCGCTCAACTGTGTTTAAATTATAACATTGACTATTGTTATTCAATTACAAACAAATTATGCCCACTTTTGGTTTTGCAAATCATAATTCTGTATAAATTTGTAGCAAAATTACAAAGACGACATGTTTTTTTCACCTAAAATGTGGCCTAATGGACATTTCTGAATTCTTGAACGTGATTGGTTAGAATGTGTACCAGTTATTTCTGTAGAAAAGAGCAACATGAGAACTTCTCTGTGAATTTGTTTTCTTGGCTTGTAGCTACTCAGTGTTAGTTAGCATGAGCCttgtctagctagctagttgttTTGATGATGGATTTAAAGATTTATGTGGGAAATTAGATAAACTGTTACAAACAAGTGTTGGGGCTCGAATATAAATTTACCATGACAGCGACGTGCTAACGAATAAACATTATTGATTCCTGCGCAGGTTTAATTTTAACAGTGTTAAGGAACGGGGGGGAAAAAATACGGTTTTATGTCCAACTTGGTAATCTGCAAAGATTTGcagtaactttatttattttattatttttttttcttgcaaaaatTCTGTCAATTTGTTGGGGCTTTATGAGAGAATGAAGGAACATCAAGGCTCATTAATACATCCCTCTCATACcttattcaaatttattttcttccaaggttttttttttttttccaagaagGAAGGGgaagaaatgcagaaaaaaagaaatgcataaaaaaaatataaaaataattaagaaagAAATTGATGTACGTGTCTGTCCCcataaacaaatcaaacacaattttcagcaaaacaggaacaaataca

Function

symbol description
kdm7a Enables histone demethylase activity; methylated histone binding activity; and transition metal ion binding activity. Involved in histone lysine demethylation. Located in nucleolus and nucleoplasm. Implicated in melanoma.

NR:

description
PREDICTED: lysine-specific demethylase 7A

GO: NA

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313185.1 True 6737 mRNA 0.42 18 3919302 3945301

Neighbor

gene id symbol gene type direction distance location
kmt2e kmt2e coding downstream 12649 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 107686 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 163445 3738884 ~ 3755857 (-)
ppfia2 ppfia2,LOC107680027,LOC107694182 coding downstream 227616 3545076 ~ 3691686 (-)
pawr pawr coding downstream 672306 3205288 ~ 3246996 (-)
cd36 cd36 coding upstream 99405 4044706 ~ 4060514 (-)
psmc2 psmc2,LOC103382982 coding upstream 838827 4784128 ~ 4792797 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 951969 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 980415 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 1008990 4954291 ~ 4965093 (-)
G276388 NA non-coding downstream 3185 3915328 ~ 3916117 (-)
G276387 NA non-coding downstream 5313 3913539 ~ 3913989 (-)
G276384 NA non-coding downstream 14371 3901262 ~ 3904931 (-)
G276342 lhfpl3 non-coding downstream 103937 3802393 ~ 3815365 (-)
G276353 NA non-coding downstream 105951 3812540 ~ 3813351 (-)
G276395 NA non-coding upstream 23394 3968695 ~ 4042521 (-)
G276420 NA non-coding upstream 125147 4070448 ~ 4142948 (-)
G276447 NA non-coding upstream 179164 4124465 ~ 4125581 (-)
G276497 NA non-coding upstream 309899 4255200 ~ 4255944 (-)
G276515 NA non-coding upstream 332758 4278059 ~ 4322681 (-)
golgb1 LOC108279640 other downstream 89900 3759211 ~ 3829402 (-)
G276340 NA other downstream 182225 3736130 ~ 3737077 (-)
G276075 NA other downstream 380559 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 425286 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 534379 3299257 ~ 3384923 (-)
G276421 NA other upstream 136977 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 352559 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 385959 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 412238 4357539 ~ 4457121 (-)
G276503 LOC108279645 other upstream 413324 4358625 ~ 4587096 (-)

Expression


Co-expression Network