cfap54 (cfap54)


Basic Information

Item Value
gene id cfap54
gene name cfap54
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19633422 ~ 19664949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313224.1
CTATGGTAACGCGGATATAAAATGGAGCCTTTACCTGCTTCATATTATGGAGCTTTAAATCAATCTAACCCTGTCATTGCCGCATTTGAGAAGGATTTAAAAGAGTTTAAATCGTATATGAGAAGAATTCGTGATTCTCTAACTTTCGACCACTTTTCTTATTCAAGAGGGTCTTTGAAACTGTTTGACATCTGGAGGAAATATGAACCTCGTCTCCCTGGACCTTATTACGAAGAGCATCTGCTGGACATTGCAGATTTTCTTTTCGAGAATAAATTTTACAGATTGGCACTGTGGCAGGGATACAGACGCTACCTACAGCGGTTCTCCCCTGCTAGCTTGGAGAACATCAGGAATGTGGAGCAACTCAAGCAGGCCTTCTTCCCACATGGCTTTCATACTGCAGGAGCAAAGCTTACGctcCGTGCTCTGTATGGCGAATGCTTGTGTGCTTTCTACTTGGAACGCGAGAGGTGCAAGCAGCCAGATTGCATCGGGATGCAGAAACTTCTTAGCGTTCTCGCGTTTTTGCGCATCACGATGCAGGCCATCCTGCCCCATGAGAGCCTGTGCTGGATGGTGTACAATGGTTCTTTGTACATCTATAGCATATGTAGGTTCTTGATGTCCGTGAGTCACTCTGCACAGGCTCTGGAGTATTTACTatgggcatgtgtgtgtctggagaCATCCATCCCACTGCTCATTCCCAGTTTCCTGCCCTGGAGAGCCACACTCTACTGCAGTGTTTGTGAATGTTACTATGATGGCCAGGCTGCTGTGCAGGCAGAGGTGTTTGCTAGACGAGCTCTTGGTAAAATAGATGAACTAGGGAAGCTGGAGAAGTTGAGTGGGTTCCCATCATCGCCGGATACAACGCGAGCCTTTAAAGACGCCACCATCAAAGTTGCAGTCATGGTGTTTAAACGCTCAGTGTATGAATCTCGGAGGAAACCTAAAGGATTTTTCAGGTTGAAACAGAAGGCCAGTCTCAGGGATGGCCAGAATAATCCATGGCCACGTACAACAACTGAGCGCATCCTGATGGAGCTGTTTGAgggaaatgctgctcagttccTGGCGGTGTTGGAGGCTCTGTGGGACAGTTCCCGCAGACCCCTGCAGACTGGCACACCGGATGACCCCGATATACAGGAGGTGGCATTCGAGCTCATGTCAGCTGGCGTCAGCATACTATCCGGAAATGGCGGCTCCTCCGATCGAGTCCGCAATGACAGCCTGCCTTTGTCTCTGAATGCCCTCACTCCGACTTGCACCCTCATGGAGATGGCAGTAGCTGGGGAGAATCAGATTTCAGTGGATGCTGCAGTGAAGTTTGTGAAGCTGCTGTTTAGATATGAGCAGTGGGACGTGTTTTGCAGTCTTTCAGACAATCTTGTGACAGTAGTGTCTAGCCTGGAAGGTCGTCTCTTCCGGAAGGCTGAGTTGGAGCTTACTCTGCTGGAAGCCATGGAGCGTCTCATGTCCACTCAAAGGGTTCGGTCTCTGGGGACCAAAGACCTCATGGCTGAGGTTCAAACTGATAAAGACCAATCTTCAGGGCTAATTAGCATGACAGAAGAGCTCCTAAATCTGGTCCAgactctgcatgtgtgtgtgtgtgaggcagccCAGGATATCAGACCGGATGAGGACCTGGTGCTGGATATTGTACTGTTCCTCTGGGCGAAATGTAAGCCTGTGTTTCAGAGAGCTCAGGCCAGACACTATGACCCAGTATGCTACATGGCCAAAATGGCTTTTCCAGAAAAGTGGGTCCAGACTCTGTTCCTTCTGTGTGAGGTGGCCTTTATGTGTCAGCTGGCTGATATAGACCCGGTGGCAGTGGCTGAGATGACTCTTAGACTGGCCTCAGTGCTGGAGGGCAGTGCAGACTCGCCTCCACTGACCATCCCAACAAAAGACTCAAATGAAGGCAGCAGTCTGCAGTCCACGCCTGTAGAGAAACCTACAGCCACGCCTACTGTGAACTCACAAGCTGAGCATCTTGAGATGGTGTGGACTGTGCTGGAGAAAGGCCTGGAGTGTGTGTCAAGAGGCAGGACTGTATGTCTCCCTCGTGATGCCTCTGCCATCTCTGACACTGTGTACCTACAGAAGGTTAGTGGAGAACATTTGAGATCTTCTGGGGATGGACAGATTGAGACCACTAGCAGTTCACGCATGAGAGCTCTCTCAATGGATATGCATATGGAACTGCTGGCTTTCCAGCACAGAGTATCCCTCAAACTCCTAGACGCCTACCCAGATGATGAGAATCTTGAGGGGAGAAAGAGGCCACTTACGCAGAGTGCACAAGGACAGTCTACTGCTGTACATTCAAAGAAAGCCAGAGCAGAATGTGCACTGCAAGAGAAgattaagaagaataaaatctCCAAAGTTTTGTTTCTGGTGCAGAAGGCCTTACTTTCCTACAAGAAAGATGCTACTAACAGAGGCACCAAAAAGCTGCTTGAGGAAGCTTTGGCTTTACTGGAGAAAGCAGGTGTTGAGGAGAAGCGGCTGGTCagtgctgctgcttctgcagaGATGGGATCAGGAGTGGAAGAAGGGTGTagacctcctccacctcctgtGCTGCTGGCACGTAGCAACCGATCTCTAACTTTCACACCAGCACCATACGTGCTGGAGGAGCAGGTTTGCTGGTACCGTATTTATGGTAGAGAAGTCGAAGGTGTCAACCTGAAAGTGCGGATTGGAGACTGCCACCTGGTTGGCACTGGTGAAACGATTCCTTCTAGAGGAGAACGCTTGTTTTGCATAACTGGCCTGGAGCCCAACCAGAAGTATATCTTTGCTGTGGCAGCCTACGACACTCAGGGCAATCTGATCGGAAGCAGTATTGGAGATACCACCAGGCCGGTGCTAGCTtccctccctcttcctctgTTGACCGCCTGGGCACATCTGGCTCAGGTGGCCTACCAAACAGGCCAGTATGCACTAGCGAAGAAAGCCTGCAGTGAGATTTGGAGCCACTTTACCCTCCCGCCCGTCGCAGACTCTGGAGCCTGTCAGGAATCAGTGGATGAGGAAGCTCCCGAGGGGCTCGCCCAGACGAAATTGTGCCCAGAGACATTGCAGCTCTCATCTCCTCTTCTGCAGCAGCTTTTCCTCACCTCAATCTTTATGCAGACAGACATCCACATCCAGCAGAGAGCACTGTACTGTGACTCCCTCAGTGATGGAAGCCCTTTGATCTGGGGACAGGAGGCTAGACTTGTAGAGTGTGAGAGGATGCTTGTGGCCATAGATCTGTCTCTACATCTCAATGACAGCAGTGCTGCCTTGCAGGCTGTGGTGAGCTGCTATGGCCTCCTGGCACCTCTTATCTTCTATCAGATCCCATCAGACCCTGTGGTTCAGGTGCTGTTGAAGTGTCTGATGGTGCTGCAGGAGATTCCAGCTGCACTCAAACAGAAAAGGCCTGTGGCTACTACTGAATCACTGTATCATATGGTGGCCTGCATCACACACTATGTAGCCAAGGGCTTGCGAGCTTTGAAAGAGGACTGTATGGCATCTTCAGTGATGGAACAGGGCAAGCAGCTCCTACTGGAGATGAGCGAGAGTCTCCAGCAGCATGACAAGatacaGAAACACCAGAAGAAGTCAGTGGCTGCACAGGAGGGTGAACCTAGTGAGGAGCTGAAGGCTTTGACATGTAGTGCTTTGAAGCAGCATGAAAAAATAGGAACAGTTGTAAACTGTGATAAACCAGTCAGGAAGAGAGAAGGTAGAAAACCCAGAGAGAAGGGTCATTCTGTCATTCAGTCAAATCAGGCCGCAGCAGATGGTTTTGATCAGGACCTCAGTGGAGAAGAGAACCGCAAAATTCTGTACAAGGTCATTGGTTCCAGCTCCCTCAGGAATGCCTTCAGAACCGTGATGAAGTTTAAACAGATGTCTTGCTTCATGGAGTTTGCTGCACTCCTGCTGCAGAAAGCTTTGCAAGAGGATCAGTTGGAACTGCTAATACAGTGGGGACGAGAAATCTTCAGCTGGATTaagagCCGAGATGAAAGTTTGATGTTGCCAAAGAAGCCTTACAGGAAATTAAGGAAAGATCAGAAGACGTTCACATCATCTGTCATACAGTActgtaataaaGTAAACAGAGTttataaaaagaagaatgaGTTGCAGAAGAAGATTTCCAGCTCAGAAGACTGTGAGAAAGAGGTCAAGCCGGTGGAGACAATGATGAAACAGGGGGGTTCAGTGAGAAGGCACCAGCGGCGGAGGGTGATGAGGCAGGTCTGCTCAGACGAGTTGCCCTGGCGATGCCGTGCCAACCTGACGCTGGCTCAAGCACACCTGGTTCTGCTGAGCAAGAACTTAAAACTTCATGTTGTAACACCTCTCGAGCTCTGTTACAGCAAGTTTTCTCTGCGCTTCTTCTCCTTGGCACGTACTGGAACACTGGTGAAATGGAATAATATTTCCCAACACACCAAACCTCCTGAGTTGAGCCCTTCAATCCTCAAAGCCACCATTCACAAAGCCAAGGATACCAGTCAGGGAGCACCAGATATGAGTGGAGAGGGGTCTGGGGAAAGTGAAGCGGAGAGTGAGCTGGACACTCCACGCACACAACTGACCAGTGATTCAGAAGGCAGTAAAACACCTGAAACTTCTAGACGCCACATCCTCTTTAAGCCACTGGACACAATCAACAAGGCGTCAGTACACCTCAGGAGAGCCATGGTCTTGGCCTATCGTGGAAGACTTTGGACATCTCTGCAGTGGGTGTGTGAGATCCTTTGGGACCAGTTCAACGCTATTGCATTTCTGGTGGAGTGTAGCCCGAGCTCTGAGACTCCCAGAACACTGACGCTGGATCAGTTCTACACAGTGTTCACACCCCTGCTGGCTCTGGCTTCAGAGCTGCTCATGGACATGATGGAGAAACTGCAGCAGTGGAAGGTGTATGATGAGGAAGGTGAAGAGCTGGAGGCCAGGCCTCTGAATGATGGAGCGCTGGTAGATCTGAAGTGGATGAGGAATTTGGTGTTGCACACACTGGAGCTCCTCTTCTACCAGGCCAAATGGGAAAAACTTGCTCATCTTGCCTTGCTATACAACTTTTATACACAGGAACATTACACTCATATGATAACCCCTGTACTGGTATATGCTCAGAGAAGACTGCTGGAAAGAATAAGCTACTTTGGAGGCCCTTCAGTCCCTCAGCCACACTTCACCTACACAGAGATGGTCACTGGAGAAAAGGTGACCTGTAGGAATTATGCACACAAGCAGCTGCTCTTAAGTTCCAGTATGGAGAGTTGGTGTGAGAGTACAGCAAGCAGTGCTGCCTCAGAACCTCTGGAGGTGGCAGAGAGGAAAAGAGCCATGTGTGTGGTCTCTGTACCGCTGGACATTGATGACACACTGCGTTGTTTCAGAGAGTCCCTGACCAAGAAACGTCACACACTTCGTGCCTTCCAGCACAGCCGCACACTGATCATGGTTCTACTAGCTGACACACAGCACTCAATAGAGGTGCCATTCTGTAAGGAGTCGTGTCATGGCTCACAGGGCAGAGTGGAGTTTAACATAGCAGCCAGCACTGCCCCATCCATCGGTCCTCCAGACCTGTCCAAGGAAGACTTCAACTCTGTGGGCTCTGTGTACAGCTCGCCCCTATCTCCCTCGCACATCCAGACCGTCCTGTCCTCCTATAGCAGCTCTATCAAATACCTTCAGGCAAATAATTATAACTCACTGCAAGTTCAAGCTCTGCATGACCTTGGGAACCTGCATTTCTATAATGGAAATCCAAAGGCTGCTCTCTCACATTGGAGCAAGGCTCTGGACTGCTCCCTGCAGACCACAAATGTGCTACAGTCCTGGGATGGTGATTCATGGGGCCATAACTCCTCTCAACAGCCCCTGAGGCATGCTGGGATATGGGGCTGTTTCCAGGGTGCATTGTTGTCTGCTAAGATTGCTCAGTATATCTTAACATCTAATATAAGCCAACGAACAAACTGCTGCCTTCTCTCCACAAAGCTCtttaagTGTCTGTTGAGGGCGTCCCTGCCTCATCCTGAAAATGATTTGGAATACGCTTCTTACACGCTGAATACGGAGCTCATCCCTGGGGTTAATATCTTCTCAGAGTCGGACCAGACTCTCGTCGGTTGCACTGTGGCCAGCCTGGGCTTTCTGTGTCACTGGCTCTACACCTCAGGACATCAGCTCTCAGCACTTCCTCTTCTGGCTCTTTACCAATATGTAGTCAGCAAAGTGTGTAGGCACCCCCATCTCACTGCAGGATGCAGAATACTGAAGGTAAAGATGTTGACTGAGCTGCGCCTGTTTGCTGAGGCAGTGAAAGAGATGCACAGTGTCAGTGATGGAGAGGAAGTCCCCATGCCTCACAACAGCTACACTAGAGCAGAGAAAGCTTCGACATGGAAGAAGTTCAGTAATTATAAACCTCTCACAGATCCTTGTAATCTTGAGGTTCTGGAGGAGCTGGTGAACAAGAGACCTGGTGAAGACTTCATGGCTTTGTATGGAACCAAACTGACCTGCCGACTCCATCTGGCCAGACTTCAGCTCATCTTGGCCATGTGTAGTACGATTCATGACCTACCTGAGCCATTTACAGAGGTTTTGGAGACACAGGTGAGGAGCTCCATTACCCCCAGCCTGCGCGACTCCAGCAGTGATGGGTCTCCCAGCAGCCCCTCCATGACGAATGAGGAGCCCAAAGacctccagctccagctccaaaAAGACACACTTACTCCAGGACAAGTCAAGGCTCTGCTACTGAAAGAGATCTTCAGCCAGCTCAATTCTGAGCTATTTGCCCTTCAGCACATCCATACAGACCCTGAGGAGCTGGAGCTGGCTGTGGAGATCAGACTGCTGCTGTCCAGTCTCAACCTGCAGCAGGGAAAAGCTGCCTCCAGTGCAGATCAAGCGGCGTCTGCTCTCAGGTTACTGCAGGACTCTCCCTTGCTCCAGAATGAGAGTATCCAACAACTGCCACCCAGATGCCCTTCTTCTGTGCTTAAGCAGTCCAGTACCAGAGCCGAACATGAGCAGCTGTATGAGCCAAAGGCAGATACCGGGCCTCAGCTAGGGGACATGCCCGCTGCAGTGGAAGCTTTAGAGCGCATGGGTCGCTCACTATGGCTCCGCTGCACACTGGCTGTGGTCCAGAGCCTCACTGCTCACATCCCTGGCACTGTCATCTACCCAGgtgtggacagcaGTGCGGAGGCGGACAGATTGATAAAACAAGGCctagctgaggctgaggcctGGGGAGACCCAGACACTCAGGCCCTGCTGCTCCTGCAGGAGGTtgtgctgaacacacactgtggtCGAGCGCCGGAGGAGAACGCCTACATACTGCAGGAGGCAGTAAGTCTGCTGTCTGGCCGTAATACCCTTTCTCTGCATTCTGGTCTGTCCCTTGCTAAGGCCACTCTGCTGCTGAGTGAACTGAGGGGCTCAGATGGTCAGCCGCTTTACTTGCTCACTCAGAAACTACTGCAGCAGCAGctGAAGACACTGGGGGAGTGTGGAGTGCAGAAGGCACTGGGAGACTGGGGCCGCTCTCCACTCCAGCCTGGAGGAACATTTACCGCCCACAGCTCCCTCTACTGGCCAGGACAACTATGCGCTTGGGTCAGTGTTTGGCCCTGCAGGCCATGGTGAGCTCATCAGAAGAGGATGAACAACGCTCGAATCTGTGGTTATTGGCTCAGGAGGAGCTACATTCTGCACTCATCATCTCACGGGCCTCGGCTAGCAGGGACCCCCAGCTGGAGGCTGA

Function

symbol description
cfap54 Predicted to be involved in cilium assembly; cilium movement involved in cell motility; and spermatogenesis. Predicted to act upstream of or within cerebrospinal fluid circulation and mucociliary clearance. Predicted to be located in axoneme.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313224.1 True 7828 mRNA 0.51 59 19633422 19664949

Neighbor

gene id symbol gene type direction distance location
cbll1 cbll1,LOC108438797 coding downstream 113814 19516354 ~ 19519608 (-)
def6c LOC108279918 coding downstream 188971 19432886 ~ 19444451 (-)
atxn10 atxn10 coding downstream 205159 19411830 ~ 19428263 (-)
pparaa ppara coding downstream 278284 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 298182 19314613 ~ 19335240 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 6576 19671525 ~ 19676383 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 194552 19859501 ~ 19868173 (-)
si:dkey-39a18.1 LOC108279454 coding upstream 226963 19891912 ~ 19896958 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 233311 19898260 ~ 19922472 (-)
wif1 wif1,LOC107655595 coding upstream 577959 20242908 ~ 20256547 (-)
LOC113532316 NA non-coding downstream 45178 19580854 ~ 19588244 (-)
G285331 NA non-coding downstream 72803 19560412 ~ 19560619 (-)
LOC117599445 NA non-coding downstream 202863 19429170 ~ 19430559 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 224617 19408270 ~ 19408805 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding downstream 227294 19405903 ~ 19406128 (-)
G285361 NA non-coding upstream 11891 19676840 ~ 19677595 (-)
G285362 NA non-coding upstream 45948 19710897 ~ 19719135 (-)
G285437 NA non-coding upstream 251660 19916609 ~ 19920334 (-)
G285425 NA non-coding upstream 288664 19953613 ~ 19960579 (-)
G285428 NA non-coding upstream 298010 19962959 ~ 19967411 (-)
LOC113532190 NA other downstream 885589 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1421029 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1421718 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1540878 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1542800 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 13334 19678283 ~ 19735232 (-)
G285607 NA other upstream 648118 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1795877 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2821287 22486236 ~ 22489467 (-)

Expression


Co-expression Network