LOC113532409


Basic Information

Item Value
gene id LOC113532409
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12363808 ~ 12367546 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313233.1
TGTCCAACCATGGCGTGCATACATATTTCACTTTGTCTGCTTCTACATTTGCTCCATTTTACAGCTCATGGAGTGGACATGGCAGAAAAGGACTCTTCAACTCCCCAGCTTAATGCCAACGAACCCTATGGGCCACAGAGTCTGACCATTCTTGGTCCAGGTGCAGTGACTGTAGGAGTCCCATGTAGCTATATATGCATTGCTGATTGCTCACCTACATGCAATTACACAATTGGTATTGATGACCAGACTGGAGAGGGCAATGAAGTAGATTTTACCCTAAGCCAGTGGGTGAAGTCCAAAATAGTGacctgcactgcaaaaaatccTGTCACCGGAAACTCCTCCACAGCCAGGAAAACCCTGCGCATTTTGGAGGGGCCAGTGGACGTTTTAATCAGTGGACCACAGACTCTAACACCAGGTAAAACTCAGCGTTTTCTGTGCAGTGCGACCTGTAAACCCTCCTGCACTTACACCTGGGTTGTTGATGGAGATTCAGTTCCTGGGTCTGGGGATGAGGTAGCAATCACAGCACCTTTGGAGGCCACCTCAGGAACCATCATCTGCAAGGCCACGAACACTGTTTCAGGACTGTTTGTAACAGCGATCCAAAAACTAAATGCTACAAGTAAGTAATGCCATATTTCCAGTAGGTACATGACAAGTTTCACTGCTTGGTCATTTAAACTCAAAGCAAGCATCCTGCCTGTCTCCAATTTACTGATAGGAATAgctgaggccaaaagtttacatacacctaggctaacaATATCCAAACTCCAAACAataa

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313233.1 True 793 mRNA 0.46 4 12363808 12367546

Neighbor

gene id symbol gene type direction distance location
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding downstream 91181 12254255 ~ 12272627 (-)
LOC113532307 LOC108279675 coding downstream 241037 12110243 ~ 12122771 (-)
LOC113532368 NA coding downstream 255146 12097521 ~ 12108662 (-)
LOC113532343 NA coding downstream 270709 12083126 ~ 12093099 (-)
syn3 syn3,LOC108279673,LOC108412895 coding downstream 282037 11989144 ~ 12081771 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 2063 12369609 ~ 12374384 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding upstream 8245 12375791 ~ 12394521 (-)
LOC113531803 NA coding upstream 34633 12402179 ~ 12409530 (-)
LOC113532240 NA coding upstream 44313 12411859 ~ 12415074 (-)
apex1 apex1,LOC107658891 coding upstream 62902 12430448 ~ 12435191 (-)
G281455 NA non-coding downstream 109653 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 269749 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 327446 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 652824 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 774121 11589003 ~ 11589687 (-)
G281486 NA non-coding upstream 1413 12368959 ~ 12369265 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 90017 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 108718 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 778736 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 801129 13168675 ~ 13210493 (-)
dusp16 dusp16 other downstream 610895 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 703481 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 775784 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1104396 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1269632 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2772379 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4033375 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4470989 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4590966 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5611217 17978763 ~ 17988280 (-)

Expression


Co-expression Network