LOC117599574


Basic Information

Item Value
gene id LOC117599574
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19271595 ~ 19272694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313291.1
TTAAAGAAAGGGTTGCTGCTGAAAGTGGACCACTTCTGTTACAGTGTTGCATTATAGAAAACTCTGTGCAATGAAAACAATGACATCTGCAGCACTTTCATTCATACTTTTTCTCTGCTCTTTGAGCTACAGTTTGGCATCCAAGCAGCAGGATGTCTACGAGGATCTCTGGAATTGGAACGTGGACGTCGCAAACAAGACTCTCCATGTCGACTTCCTGCAGCAAATGCAAACCAACAGCCTGCAAGCGGAGCGCTACATCAACTTCACCTTGCAGGACATCAACTATGTGCTAGAGGTTACCAATATGCTGAAGATGATGAGCAAGAAGGTCAGCAAACCGGAAGACATCAGAGACTTCATAACAGGAAGATACACAAGTTACAAGTCATTCTTGGACGTGTTACTTCAGCAATATTTCTTTAAGGATACCCCTCCTATCAAACCAACTCCAGCCATGAAGAAATATCTGGAAACTTACCATGCAGTGATGAAGAAAGATCCTATCTACTTTGCTGTGGCTCTCCTGCCCTGCTCCAGGCTCTGGGTGTGGCTGGCTAACAATCTGAACATACCTGAAACCAATGCCTACTACACATGGAAAGTAGACAATATGGGTGGCCACCCTGAAAAGCATTACAAAGCTTTACTGAACAAATATCTAGACACAAATGAAAAGATAAATACTGCCAATGCCCTGTTCCGCAAGCAAATGCAGAATGAACATGACTTCTTTGCCACTTCTTGAGTTGATCATATTTTA

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313291.1 True 763 mRNA 0.43 3 19271595 19272694

Neighbor

gene id symbol gene type direction distance location
LOC117599464 NA coding downstream 9551 19260713 ~ 19262044 (-)
LOC117599463 NA coding downstream 17398 19252823 ~ 19254197 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding downstream 24232 19190496 ~ 19247363 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding downstream 110314 19140445 ~ 19161281 (-)
tfec tfec coding downstream 164169 19095392 ~ 19107426 (-)
LOC113531838 NA coding upstream 10456 19283150 ~ 19284499 (-)
mcm10 mcm10 coding upstream 41919 19314613 ~ 19335240 (-)
pparaa ppara coding upstream 62967 19335661 ~ 19355138 (-)
atxn10 atxn10 coding upstream 139136 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 160192 19432886 ~ 19444451 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 333500 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 348698 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 409443 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 440456 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 448395 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 15897 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 83866 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 132385 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 133209 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 135576 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 523762 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1059202 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1059891 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1179051 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1180973 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 405589 19678283 ~ 19735232 (-)
G285607 NA other upstream 1040373 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2188132 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3213542 22486236 ~ 22489467 (-)

Expression


Co-expression Network