LOC113531974 (LOC108279712)


Basic Information

Item Value
gene id LOC113531974
gene name LOC108279712
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17498388 ~ 17506497 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313292.1
ATACGGGTAGGAAATACGTTACGCTCACGATTCGCGCATGCGCATTTGGTGTCTACAAGTACTGCAAGCACCGACCACTTTTAGCAGAAAGTCCAGCTAAATTATTGAAGCACGTTATggGTTCTGTCCCACCCATTTCCTCACTGCGCTTACTGGTTCCACCTTTACGGCTGATGTCTGCCTTTATGTGGAAAATTGCCCAACAGCAACATCTGGAGCATTACGGCAAACTAGAAGAATTTGTCTCCTTAGTTACAAGGCTCGTCCCAGAGGTCCTGACCAGCAGACAGAAGGCCACACTGGTAATGGGGCTCAGAGCAAAGATGATTCTCGAGATGTGCCGAGGTGAACTGCCGGCAGACCTCGAGACAGTGAAGTCGCACATACAGAGGATTCAGTCCTCTCATTCATCAAAAGGAATTGATACAGAGGCAGACATTTTACAGGCAAACCTTCTAACGCTTGTGCTGGGTCTGCTGGAGGATCCTGCCAAAAAGGAATATTTCTTCCAGGAGGTTTTCCCACATGAGTATGGTCCAGAATTTGACCAAGCACTGCAAGTCCTGGTTGGCCATTTTCTCTCGAGACTGGAACAGCTGCTGCCAGTTCCCAGCTTCAAACAGactTCATCGTGGCTCAGTGCCTGCCCCTGGGAGTGGAATGAGTACCTGGAATCAGTTTGTAGGACGGAGAGTTTATTACCTTTGATGCAGATTGGCATTTGTGGGACTTTGGAGGATAACGCACTTCCATCGATTGTGGAGGACAGAATCCTCTCCTCGTTGTCTCTAACCGACATGGTGATAACCACCCAAACGCAACCCCCGTCCCAGGGGCCTCAGGATGTGGACGGCGAGAGTGCACCAGAAGATGGTGTCCAGGATGAAGACGTCAGTTCAGGTCTCGATGGATCTGTAGCTGCAGAATACGTAAGAGCCAACGACGGTGCAATGGAAGAAGATTCAGAGAGACAGACctttgagagagagatcaaGGAAGCTATTAAACATTTAGAAAAGGAGAGCGACATGTCGGCCGAGGTGGCTGGGAGTCTGCAGAGCACAGGAGTGCCAGAGGTTGACTCAGAATTGAAAACTACTGATGAAACAGGAAGTGCCATATCTGAAGCAGCACCTGCAGCAGAAGATATTACAGCTGAACAGCAAACCGTGATCCCCAGAGTTGCACATACAAAGATCATGCACCCACTGGAGGTTTCACACTCTACAGCAAACCGAGGGAGTGACGAGGGGGTAACCGACCAACATGATCCACAGCAgACTGTTTTGGAGGAAGCAGCTCAGGGAGAGGTAACTGCTGAAGCACCAGAGTCGGAGAAGTCTCCCAACAATCCACTGGCAGTCGAATCCTCAAAGATACCTTTAAAGAGTTCTTACCTCCTTGGCAGGCTTTTACACAAGTGTCTGAAGTGTGGCAAGCGTTTTGCATATCGCTCGGAGCTCCATAAACACCAGGAGAGTCACAAACTCGCAACATCTATCAAGTGTTGTGAATGTGGGCAAATTTTCAGAGATTCTAAACTCCTGTCTCTGCACCGGCAGAGAGGCTGTCGTATGAGGACGTACAAATGCATCAAGTGCGGAGCAGCCTTCAGGTCTCTCTCGAACTGGTACAAACACCAGCAGGCCCACAAGGTGGTCTGCACACACAAATGCCCGGAGTGTGGGAAGGTGTTCCGAAGTCTCACAGGCTTAGTGGCTCACAGACGAGAGCACATGGGTCCTGCAGTAAACGGCGTTTACACCTGTGACAAATGCGACATGACCTTTGGCTCGTATCGAGGCAGGGTGCTGCACCAGAGGGTCCATACGGATAAATCCAAGCAGCCTTCTCGAAAGGAGCGTGAACCCGGGAAGTGCCGCTTCTGCGACGAGTCGTTCGTCCTGCTCAGCGATTTGAGAGTGCACCTGAAAACTCACCCCGAGTACAGACCGCATCAGTGCGACCAGTGTGGGAAGTGCTTCGCTCTGCACCACAGTCTCCTCGCACATCTCTCGAACCACACCGGAGACAAGCCATACCTCTGCACGCAGTGCGGCAAGCGCTTCTTCAGCAAGGTCCAGCTCAAATCGCACATGAGGTGTCACTCGGGCGAGCGGCCGCACATGTGCCCTCACTGCGGGAAATGCTTCTCGCTGCTCGGCAACCTGAACATCCACGTACGAATCCATACTGGCGAGAAGCCCTACTTGTGCCGTCATTGCGGAAAAGGCTTCATCTCTGCCGGAGAGCTGCAGGTGCACGAGCGCAGTCACACTGGCGAGAAGCCCTACTGCTGCAGCATTTGTGATAAAAGATTTGTGGTGTCGAGCCACCTGACGGCTCACAAGCGCGTTCACACAGGAGAGCGTCCCTACACCTGCACTCAGTGTGGCAAGACCTTCATACGGAGATACGACTGGAATAAACACATGTACACTCACTCAGGGGTGAAGCCCTTCCCCTGTACTATCTGCCAAAAGAGCTACACACGTCGCACACACTTGAACAGACACATGCAGAGCCACGGCGCGGGCCATTAGGAACATCAATCTGAATGTGACCAGAGTGGAAATTGGTTAATGTACAGAAGTACATACTTTAAATAAGGACATTCCAGTGCAGAGTTTCAAAAGCACATTGCTTATATGTTTTGTTTGACCAAATGCAGATATAATTAACCAATAAATGTTGGCCTTCTAGTTTATcaa
>XM_034313293.1
ATCCGCCATGTTGTCTTGTGGCTACGTCCGAAaccacaccctattcactatatagtgtgCTGCTTTCGGAGTCCGCCATTTTGTAGTCGAATCACAAATTCCGCTCCCTACATTAGGTAGTGTGCTACTTGGTGCCCCAGGGCGCATGCGCAGTACCATCTCCTGGCCGTACAACAATCCACTGCAGCCAACGACAGCCAGTAAAACAGGACATTGAGGCAGAAACTCAGCAGCAGTGCTTCAACATCATGATGGGTTCTGTCCCACCCATTTCCTCACTGCGCTTACTGGTTCCACCTTTACGGCTGATGTCTGCCTTTATGTGGAAAATTGCCCAACAGCAACATCTGGAGCATTACGGCAAACTAGAAGAATTTGTCTCCTTAGTTACAAGGCTCGTCCCAGAGGTCCTGACCAGCAGACAGAAGGCCACACTGGTAATGGGGCTCAGAGCAAAGATGATTCTCGAGATGTGCCGAGGTGAACTGCCGGCAGACCTCGAGACAGTGAAGTCGCACATACAGAGGATTCAGTCCTCTCATTCATCAAAAGGAATTGATACAGAGGCAGACATTTTACAGGCAAACCTTCTAACGCTTGTGCTGGGTCTGCTGGAGGATCCTGCCAAAAAGGAATATTTCTTCCAGGAGGTTTTCCCACATGAGTATGGTCCAGAATTTGACCAAGCACTGCAAGTCCTGGTTGGCCATTTTCTCTCGAGACTGGAACAGCTGCTGCCAGTTCCCAGCTTCAAACAGactTCATCGTGGCTCAGTGCCTGCCCCTGGGAGTGGAATGAGTACCTGGAATCAGTTTGTAGGACGGAGAGTTTATTACCTTTGATGCAGATTGGCATTTGTGGGACTTTGGAGGATAACGCACTTCCATCGATTGTGGAGGACAGAATCCTCTCCTCGTTGTCTCTAACCGACATGGTGATAACCACCCAAACGCAACCCCCGTCCCAGGGGCCTCAGGATGTGGACGGCGAGAGTGCACCAGAAGATGGTGTCCAGGATGAAGACGTCAGTTCAGGTCTCGATGGATCTGTAGCTGCAGAATACGTAAGAGCCAACGACGGTGCAATGGAAGAAGATTCAGAGAGACAGACctttgagagagagatcaaGGAAGCTATTAAACATTTAGAAAAGGAGAGCGACATGTCGGCCGAGGTGGCTGGGAGTCTGCAGAGCACAGGAGTGCCAGAGGTTGACTCAGAATTGAAAACTACTGATGAAACAGGAAGTGCCATATCTGAAGCAGCACCTGCAGCAGAAGATATTACAGCTGAACAGCAAACCGTGATCCCCAGAGTTGCACATACAAAGATCATGCACCCACTGGAGGTTTCACACTCTACAGCAAACCGAGGGAGTGACGAGGGGGTAACCGACCAACATGATCCACAGCAgACTGTTTTGGAGGAAGCAGCTCAGGGAGAGGTAACTGCTGAAGCACCAGAGTCGGAGAAGTCTCCCAACAATCCACTGGCAGTCGAATCCTCAAAGATACCTTTAAAGAGTTCTTACCTCCTTGGCAGGCTTTTACACAAGTGTCTGAAGTGTGGCAAGCGTTTTGCATATCGCTCGGAGCTCCATAAACACCAGGAGAGTCACAAACTCGCAACATCTATCAAGTGTTGTGAATGTGGGCAAATTTTCAGAGATTCTAAACTCCTGTCTCTGCACCGGCAGAGAGGCTGTCGTATGAGGACGTACAAATGCATCAAGTGCGGAGCAGCCTTCAGGTCTCTCTCGAACTGGTACAAACACCAGCAGGCCCACAAGGTGGTCTGCACACACAAATGCCCGGAGTGTGGGAAGGTGTTCCGAAGTCTCACAGGCTTAGTGGCTCACAGACGAGAGCACATGGGTCCTGCAGTAAACGGCGTTTACACCTGTGACAAATGCGACATGACCTTTGGCTCGTATCGAGGCAGGGTGCTGCACCAGAGGGTCCATACGGATAAATCCAAGCAGCCTTCTCGAAAGGAGCGTGAACCCGGGAAGTGCCGCTTCTGCGACGAGTCGTTCGTCCTGCTCAGCGATTTGAGAGTGCACCTGAAAACTCACCCCGAGTACAGACCGCATCAGTGCGACCAGTGTGGGAAGTGCTTCGCTCTGCACCACAGTCTCCTCGCACATCTCTCGAACCACACCGGAGACAAGCCATACCTCTGCACGCAGTGCGGCAAGCGCTTCTTCAGCAAGGTCCAGCTCAAATCGCACATGAGGTGTCACTCGGGCGAGCGGCCGCACATGTGCCCTCACTGCGGGAAATGCTTCTCGCTGCTCGGCAACCTGAACATCCACGTACGAATCCATACTGGCGAGAAGCCCTACTTGTGCCGTCATTGCGGAAAAGGCTTCATCTCTGCCGGAGAGCTGCAGGTGCACGAGCGCAGTCACACTGGCGAGAAGCCCTACTGCTGCAGCATTTGTGATAAAAGATTTGTGGTGTCGAGCCACCTGACGGCTCACAAGCGCGTTCACACAGGAGAGCGTCCCTACACCTGCACTCAGTGTGGCAAGACCTTCATACGGAGATACGACTGGAATAAACACATGTACACTCACTCAGGGGTGAAGCCCTTCCCCTGTACTATCTGCCAAAAGAGCTACACACGTCGCACACACTTGAACAGACACATGCAGAGCCACGGCGCGGGCCATTAGGAACATCAATCTGAATGTGACCAGAGTGGAAATTGGTTAATGTACAGAAGTACATACTTTAAATAAGGACATTCCAGTGCAGAGTTTCAAAAGCACATTGCTTATATGTTTTGTTTGACCAAATGCAGATATAATTAACCAATAAATGTTGGCCTTCTAGTTTATcaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313292.1 False 2711 mRNA 0.51 9 17498388 17505454
XM_034313293.1 True 2846 mRNA 0.51 9 17498388 17506497

Neighbor

gene id symbol gene type direction distance location
LOC117599443 LOC108279803 coding downstream 3601 17486811 ~ 17494787 (-)
LOC117599538 LOC108279803 coding downstream 12967 17484558 ~ 17485421 (-)
slc37a3 slc37a3,LOC107562143,LOC107758206,LOC107601005,LOC106609230 coding downstream 17554 17462955 ~ 17480834 (-)
sapcd1 LOC108280126 coding downstream 59310 17434442 ~ 17439078 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding downstream 181806 17261690 ~ 17316582 (-)
ckap4 ckap4 coding upstream 84623 17591120 ~ 17594317 (-)
LOC113531978 LOC108279914 coding upstream 105393 17611890 ~ 17616249 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 289387 17795884 ~ 17809289 (-)
ano2b LOC108279462,LOC108425378 coding upstream 401131 17907628 ~ 17971244 (-)
strip2 strip2,LOC107656389 coding upstream 484132 17990629 ~ 18023472 (-)
G284003 NA non-coding downstream 455108 17041627 ~ 17043280 (-)
LOC117599589 NA non-coding downstream 878670 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 1048622 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 1202198 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 1258487 16239515 ~ 16239901 (-)
G284131 NA non-coding upstream 379 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 7113 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 14929 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 41835 17548332 ~ 17553258 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding upstream 51910 17558407 ~ 17564955 (-)
phf21b phf21b other downstream 470523 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 644993 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1091525 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2314313 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5745475 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 472266 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 521237 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 562101 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 576741 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 577286 18083783 ~ 18083854 (-)

Expression


Co-expression Network