prl2 (LOC108279639)


Basic Information

Item Value
gene id prl2
gene name LOC108279639
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12809321 ~ 12819706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313323.1
cctccatgtcacctgatatgaccgatcttccagCTGTTCTCTTTGTGGCATTTCTGTGCCTGGACTTGTGCACCTGTGTGAGCACCATGCCAATCTGTGCCTATGGACACACCGGCTGCCAGCTCCTGTCTCTGGCTAATCTCTTCGACAGGGTGATCCAACACTCAGCCAGGATGCATGGACTGTCCAACGACCTGCATTCAGAGCTTGAGAAATACTTCCTGTCTGGCAAAAGCCACACTGGCGTGTATCACAAGTGCCACACATCCAGCATACTAACTCCTAATGGCAAGGAAACTGCACAGAAACTGGCTCATGAGGAGTTAACAGAGGTAATTCTCAAGCTTTTGATGGCATGGAACTATCCTCTGTCCCTGCTGCACGAGAGCATGTCCCACCAACAGGACTTTAACAGCTTCATCAGCAGTAAAGCTTTGGAGATGAGTAACATTGCTCTTGAGCTCAGGAAAGGAGTGGAGAAAGTTGTGGAGAAGATGCAGTTGTTGGAGATGATCAGTAACTCAATGAATGACTTCACCTCTCCTGAAGACTTATTTCCTGCCAATGGAGAGGCTATGAGTGAATACGAGCTCCTCTACTGTTTCCGCCGTGATTCCGACAAGGTCCAGAACTACTTGAAGATCCTTAAATGCAGAATTGTACCTGATCATGGCTGCTGAGCACCACTCACCTGCATTACTGGACTGCTTATATTGCTCTCGGTACACTTCAATTCTTGATCTTCCACTATTTATATCCATGTTTGTGTCCCACATATGGGGAACCTGTTTTCAAAACTTTCATTTGTCAATAATGGTGAAGATTGACAAAGAAGctgataaaaagaaaagaaattgacTGAAGATGATTCTGCAatagtatttataaatatttaggtATTTACGA

Function

NR:

description
PREDICTED: prolactin-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05439 PRL; prolactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313323.1 True 906 mRNA 0.45 5 12809321 12819706

Neighbor

gene id symbol gene type direction distance location
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding downstream 5899 12787882 ~ 12803422 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding downstream 172905 12592087 ~ 12636416 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding downstream 220641 12584837 ~ 12588680 (-)
LOC113532438 NA coding downstream 228258 12580923 ~ 12581063 (-)
cmasa NA coding downstream 229367 12570068 ~ 12579954 (-)
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding upstream 143010 12962716 ~ 13110214 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding upstream 369156 13188862 ~ 13198925 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 457220 13276926 ~ 13304279 (-)
depdc4 depdc4,LOC108427048 coding upstream 484748 13304454 ~ 13310263 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding upstream 505695 13325401 ~ 13338373 (-)
G281527 NA non-coding downstream 331692 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 350229 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 440056 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 555166 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 715262 12093857 ~ 12094059 (-)
LOC113532391 NA non-coding upstream 326576 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 348969 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 439446 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 500467 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 587907 13407613 ~ 13409326 (-)
dusp16 dusp16 other downstream 1056408 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1148994 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1221297 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1549909 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1715145 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2320219 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3581215 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4018829 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4138806 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5159057 17978763 ~ 17988280 (-)

Expression


Co-expression Network