LOC113532307 (LOC108279675)


Basic Information

Item Value
gene id LOC113532307
gene name LOC108279675
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12110243 ~ 12122771 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313357.1
CCCGATCTGGAAAGTAAACACGCTGAAGTCGTGCTTTCTTCGCACTCGGGAGCAGCAGCACTGGTGTGTCCGTGATCCAGGAATAATGTCCGCACTGCTGACTATGGAGTCTCTGCTTAAGCGGATCTGTGCGAATGATGGCGCTATGCTCTATGATGACTTGCTGTGTGGCTCTAGAAGCGGTTTCTTGGACGAGTGGTTTAGCAGCTCTCCGGTCGATACAGTTGTTGAAGGAAGCGACTCTCTCGTGACGGTTTTTGTAAATGGACAGAAAACGGTTATAGCCAGGACGGGAATGAAGCTGTGCAGGGCGAAGAACTGCAGCGGATGCTTGAATTTACACCTGTGCAAGTTCTTCCTGTTCGGTGACTGTCAGTACGGAAGAGGAAGACGAGGATGTCGTTTTAATCATGACCTGCAGAAGGAGCAAAACGTCCTTCAGGCACATGGGCTGAGTCAGCTGGACAGGAGAGAGCTCTGTACCTTACTACTCCAGAGTGACAACAGCATCCTACCTCCAGTGTGCCATTCTTACAACAACGGCACGGGTCTGTATGGGCGATGCGAGGACGGCGAGAACTGCAAGCGGCTGCACATTTGCGAGAAATACCTGAGAGGCCCGTGTCAGTGTCCACGAGCACACGATTTCTATGAGCCCCATCCTCTGAAAACGTTGCAGGATAGAGGTGTTCCCGCTGAGCTCATGGCATCTATGAAGACCACATACTCAAACATCGAGGCCTTACGAATAATGGCTAAAGTCAGACAACCTCAAAATGGTGGTAGATTTCAAGAGAACAATGGCCAGAGATCCAACAGAAATGGCAACTGGCAGAAACAGACATCGGCTGATGCTAATGCTACAGGTAGTGGAGGTCCCAGGACCAACAGAGGCTCAAACCCCAGGAATCCGCAATGCTCTCAAGAGAAAAAGGAGATCTGTATGTACTTTATCAAAGGACACTGCAGGAACGGAGataaatgttttaaagagcaCTCCAAAGTGCCGTATAAATGGGAGGTGAAGGAGGGGCTCGGCTGGGTAGCTCTTCCTGACAATGAGGGCATAGAGAGAGATTACTGTAACCCGGCTAAAACATACAGCTCTGGAGTCTGCTTTGATACAATGACCCGTGGCTATGACGTCGTGCGGCGTCTCTCGACGGTCTCCTCTGTCATCCAACCCAACTACATCCTCACCACCACTTGGGCATGGCACTGGGAGGATGAGTACGGCAACTGGATCCAGTATGCATCGTCAGGTGGAGGTCACAACACAGCTTCCATCACCAGTGAGGACTTGGAGCAGAAATTTACGCAGGACAGCAAAGCAGAGGTGGAGTTCACGGCTGGCTCACAAACGTACACGCTCAGCTTCCAAGATATGATACAGACAAACAAGCGCTATGGAACCAAAAAGCTTGTGAGGCGTCGACCTGTATTTGTGTCAGCAGCAGATGCTCAAACAATCAGAACAACCAAACCGGCTCCCAACAGCCAGATGAAAACACTGCCAAGCCACTGGAATAAAGCGCAGACACCTGAGATCGGTTACAAGAAATTACTACTGCAGAAAGATTCAAGTGAATACACTGCAATCGAGCGCCTTTTCAACACCACTATGCGAGGATTCGGCATTCAGCAGATTGAGAGGATACAAAACAGAGCCCTTTGGGAAGTATTTCAGTGgCAGAAAGATCTGATGAAAAAGAATAACACGGGGAATAACGTTGCAGAGAAACAGCTGTTTCATGGGACAGACTCCAAACACATTGACGCCATCTGCCTCAATAACTTTGACTGGAGAATCTGTGGCACTCACGGCACAGCCTATGGGAAAgGGAGTTATTTTGCCAGGGATGCCAAGTACTCGCACAGCTACACCGGAGACTCCACAACTCGCTGCATGTTTGTTTGCCGTGTCCTAGTGGGTGACTACACCCTCGGCAACTCCAGCTACACCCGCCCCCCCTCCAAAGATGGAGGAGACACCATCTTTTACGACAGCTGCGTGAATGATGTCCACAACCCATCCATATTCGTAGTGTTTGAGAAGCATCAGATCTATCCAGAGTATCTCATTAAGTATAGTGAGACGAGTCAGTCGTCCTCCCCGTATCACAGGTCAACTCCTTCTGTAGCAAACAGAGCAGCTTACGTTCCTACAGCTTCTACATATCAACCCAACCCTGCTGCTACAGTTCGGAAAATAACGTCTACATATCAACCCAAACCTGCTCCTACAGTTCAGACAGCAACTCCGACATATCAACCACAGCCTGCTGCATCGTCATATTCTTCAACATATTCATCACTCTCATACTCGAGGCCTCCCACCCCTCGGCAATCCAAACCAGACAACTCCTGCATTATCTGCTGAGGACGATGAGgttaaatgtgaaattacaccctgtattacaGTTTTTAACATGGCCTAATCAATCTCCCCTTGCCATGTGCCCTTAGGATGGTTCATATTTTAATTGTCGTtccaatattttattaacattagaTCACCCTTTATGGGTCTGAAAGAATGAAACAATGTGCATAGAGGAGCAGAAGGAACTGTAATGGCAGAAGGCTCTGTGATCGCATACATTTTCCTCTTCCTTTAGCTCACATGATATTTTAGGGAGCCAAGTGCTTGATTCAGTGCTAAATGATAGCAGATATAGCGTGTTACTTTATTAATTGTATTGAAACACAGGTCAGGTAAAGCAGGTGTAGGTAAAAGCTCAAAACAGATATAGATTGATAAGTTTTCAAGAAGGTTGTGCACATTTTACTAAGATTTACGTCACTCTAAACTGAACAGAAGTGAAACTTCCATTAATTCAGTTCTTATGACTTGTACTTAAATTCACTAATCATTCACTAATTAATTTGAGCCTCTATCACTTGACTGgaacgtttgttttttttgttttgtttgtttttttcatgctAATATTGGCACCCGTTCCCAAGTCAGAGCTTACTGTTAACTATTTTGATTGCATAAAATATGTACTACATAGCACCTCAACTATAAAGTTTGAGAATATCAttgtatcattttatcatttaaaatatatgccggtgtcacaaaaaaatgtgtgagtTTCACACCCAGGTTTGCAAAAAAGGgctttatttgagttacttaaACATTTATTTGGGTGATTTAAATCAAGTTGAATTTCACTGAGTGTATTAGATTCATTTAATCTCTCAAATATTTATTGGAATCATTGAAATCAAAATCTTTTGACTCAGGACTCCTGCGTATAATGTCAACTGTGTGTTCAGGTTCCAGCATAATAAAGACAGTTGTATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313357.1 True 3322 mRNA 0.45 13 12110243 12122771

Neighbor

gene id symbol gene type direction distance location
LOC113532368 NA coding downstream 1581 12097521 ~ 12108662 (-)
LOC113532343 NA coding downstream 17144 12083126 ~ 12093099 (-)
syn3 syn3,LOC108279673,LOC108412895 coding downstream 28472 11989144 ~ 12081771 (-)
ptpro ptpro coding downstream 184736 11865792 ~ 11925507 (-)
tbk1 tbk1 coding downstream 314318 11773891 ~ 11795925 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding upstream 131484 12254255 ~ 12272627 (-)
LOC113532409 NA coding upstream 241037 12363808 ~ 12367546 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 246838 12369609 ~ 12374384 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding upstream 253020 12375791 ~ 12394521 (-)
LOC113531803 NA coding upstream 279408 12402179 ~ 12409530 (-)
G281373 NA non-coding downstream 16184 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 73881 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 399259 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 520556 11589003 ~ 11589687 (-)
G281070 NA non-coding downstream 526606 11583393 ~ 11583637 (-)
G281455 NA non-coding upstream 128543 12251314 ~ 12254155 (-)
G281486 NA non-coding upstream 246188 12368959 ~ 12369265 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 334792 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 353493 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 1023511 13146282 ~ 13147358 (-)
dusp16 dusp16 other downstream 357330 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 449916 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 522219 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 850831 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1016067 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 3017154 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4278150 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4715764 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4835741 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5855992 17978763 ~ 17988280 (-)

Expression


Co-expression Network