LOC113531956 (LOC108279597,LOC108279598)


Basic Information

Item Value
gene id LOC113531956
gene name LOC108279597,LOC108279598
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9350878 ~ 9359050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313366.1
tattttttttaatcattcctTACAGTAGGTGGGCAGTGAATGGGTTTGGAAGCTTTGCATTAGTCTCTCTAGTGCAAGTTATTATCAGTTTACTGCATAACATCTTAACTGAGATATGGACACTTCCAGAGATATTGGAAAGATCCAGTCAAAGAAGCAAGATGAGTATATCTCTTTAGATGGGAATAGCCTCACAACTGCTGATTTGGTCAGTTTGGGAAAAGGCCTTTATAAGATTAAGCTGAGTGCTGAGGCAGAGGAGCGCGTGATCAGAGCTAAAGATGTTATCGAGAAGATCATATCTGAAAAACAAGTTGTTTATGGAGTTAACACAGGATTTGGTAAATTTGCACGGACCGTCGTGGGGAAAGATCAACTCAAGGAGCTGCAGGAAAATCTGATCCGCTCACATAGTGCTGGAGTTGGACCCCCACTGAGTCCGGAGAGGACCCGGATGCTTCTTGCTCTCAGGATTAATGCCTTAGCCAAAGGTTATAGTGGCATTTCCTTGGAGACTCTTCATAAAATGGTGGCAGCCTTTAACGcctccTGTCTCTCCTGGGTTCCTGAGCAAGGGACAGTAGGGGCGAGTGGAGACCTGGCCCCTCTAGCTCACCTGGCTCTGGGGCTGATGGGAGAGGGACGCATGTGGTCACCACAGACTGGCTGGACTGATGCCACAACTGTACTAGAAGGACACGGTCTGACTCCAATATCACTGAAACCCAAAGAGGGGCTTTCTCTGATTAACGGGACTCAGATGATATCATCACTGGGTGCTGAGGCAGTAGAGAGAGCAGAAGCGATCACCCGGCAGGCTGATGTCATCGCTGCTCTCACTTTAGAGACACTGAAGGGAACCAACAAAGCTTTCGACTTTGATGTACATGCAGTGCGGCCTCACCCGGGTCAGATTTTAGTCGCCCAGAGATTTCGCTCGCTGCTTCATTCTGACTTCTTTCCCTCAGAAATCACAGATGAGAATTCCTACAGCAGAGTTCAGGATGCCTACACACTGCGATGCTGCCCTCAGGTGCATGGTGTAACCAATGACACGATTGCTTTTGTGAAGAAGATTCTCAACACTGAATTAAACAGTGCCACCGATAATCCTTTGGTATTTTCAGAACGAGGAATCACTATTTCAGGAGGAAACTTCCACGGTGAATATCCTGCTAAGGCTCTGGACTTCCTGGCTATAGGAGTGCATGAGCTGGCGAGTATTAGTGAGCGGCGCATCGAGAGGCTGTGTAATCCCTCACTCAGTAATCTCCCTGCCTTCCTTGTGAAGGAAGGGGGATTAAATTCAGGCTTTATGGTGgcccactgcactgctgctgccCTGGTGTCGGAGAATAAGGTTCTGTGCCACCCGGCCTCTGTGGACTCTCTGTCCACCAGTGCAGCTACAGAGGACCATGTGTCTATGGGGGGCTGGGCAGCCAGAAAGGCCCTGAAGGTGGTCGAGCATGTGGAGCAGGTCCTTGCCATTGAGTTACTCGCCGCCTGCCAGGCTCTGGAGTTCCACCGGCCTTTAAAGACCACAGCTCCTCTGGAGAAGGTCTACGAGCTGCTGCGCTCTGTAGTCAGGCCCTGGGACAAAGACCGCGTCATGAGCTGTGATATCAAAACAGCTCACCAACTCCTCCTAGAGGAAAAGgtgtggaAGGCAGTGCTACCATTCATGGACCAGTACAAGGAGATTGACCACCAACATCTCACTTCTCCTCCTGCTCACATTCATGTTTAAAAAGCTTTCTATTCATACATAAACTTTATTCAGCActcaaaatgaatgaaatatcaATCACTCAGACATTATTTGGATGTCATCTGAGGTGTCAACCTGAAAAAGATTAACACAATTTTCAGTGTTtgtactaccaccaccatgcttcttTGCAGCACTTTTTAATATGACAGGCATGTGACTATGATTGGCTACCCAACTGTCTTGAATAACAATTGTAAGTCAAACATTCAGCAGAAATTTCAGCAGCTGTCTGAGGTGTTAGATCATCATGTTATGCTATGACAGTTTTcgtaatatatattataacagcTTTAACCTACGCTAATTAGAGAGCaattagcaaaaaaatatatgacaTGATATAACCTGACATCAAATGTTATGAAGTTATAATTACATTTCCGGTAATGGTGACATGGCACTTTTATATTACTGCCTATCAAGTGTTATGACAACTCATTACAGCAAATGAGATCAGGCATGATATGTTTTTGACAAGactaaatactgtatgtgtcatGATGCACGTGTTAACTAAAGTGTTACCAAGAAAATCTCTAAATCATGAACTAACCATAACAGTGGACAGAGGGAGGTGATAAATTGAGATGGTTGCTTTCTCAGAATTAGAAATGTGATATTAGATGAGATTttgtaatattgtattttatctcagctttactttttaatctgaagaatGATGTTGGAAATTTGCTATTAGATAGCTTTGGCACAAATCATCTTTTCTCATTTGAGATTAATGGTAACAGTCACTGAAaagaataaatacaataaagtaagcaaaatgtaaaacaattattattgaaaatgatTCTGTATTTCACGAAATTAAATTTGGATTTtccgatgatgatgatgatgatgatgatgaagtgagCAGAGTAAAGGTTTCATGCAGCAAA

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313366.1 True 2676 mRNA 0.43 20 9350878 9359050

Neighbor

gene id symbol gene type direction distance location
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 3832 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 59469 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 161943 9167589 ~ 9188935 (-)
hsp90b1 hsp90b1,LOC107656288,LOC107726017 coding downstream 716923 8626921 ~ 8633955 (-)
sbf1 sbf1 coding downstream 802250 8488152 ~ 8548628 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding upstream 32979 9392029 ~ 9423268 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 200861 9559911 ~ 9593266 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 235408 9594458 ~ 9600035 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 241527 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 258358 9617408 ~ 9623595 (-)
G279588 NA non-coding downstream 13348 9336336 ~ 9337530 (-)
G279382 NA non-coding downstream 156875 9193616 ~ 9194003 (-)
LOC113532431 NA non-coding downstream 541540 8809220 ~ 8809338 (-)
LOC117599455 NA non-coding downstream 652087 8698430 ~ 8698791 (-)
G279064 NA non-coding downstream 738536 8612118 ~ 8612342 (-)
G279592 NA non-coding upstream 27083 9386133 ~ 9389747 (-)
G279620 NA non-coding upstream 125043 9484093 ~ 9484948 (-)
G279621 NA non-coding upstream 126017 9485067 ~ 9485769 (-)
G279624 net1 non-coding upstream 158936 9517986 ~ 9519727 (-)
G279625 NA non-coding upstream 160783 9519833 ~ 9520078 (-)
G279415 NA other downstream 142315 9207351 ~ 9208563 (-)
G278912 NA other downstream 1131198 8218561 ~ 8219680 (-)
G278634 NA other downstream 1282801 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1380307 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1850799 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 519431 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 896922 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1636055 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1720118 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1879885 11238935 ~ 11259412 (-)

Expression


Co-expression Network