asb15b (LOC108280075)


Basic Information

Item Value
gene id asb15b
gene name LOC108280075
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10451578 ~ 10461046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313381.1
GACTTTCATATCAGCAGCGTGTGGAGCTGACGTTTGTTTACATGTGCAGTAGTttgttgttaaaatggcagAGCAActggatgaagaagaagaagaacagcttATTGACCTTGCCATCCGGAGAAGCCTTCAGGACAGCACTTCACCCCTCTGTCCAAAATGGAGTACAATGGAAACAGCGAGTGATGACAATGTGAAGATTTTAGCAGCTATAGACCAAGGTGACTTGGCCACTTTGCGGGCACTGCATGGGAAAAGAAGTGCCTTTACACAGACGGACAGTAGAAGTTGGCTTCCCTTTCACAGAGCCTCCGTACGGCCAAACACAGAGATTCTGGATGCTGTTCTACTCGCATCCCATGAGTTGAGCATGGAAGAGGTTACAGCTGACGGTGAGACGGCGCTGACTCTCGCTGCTCAGGCTGGACATGTGGAGAATGTGAAGGTGCTGCTGCAGCATGGCGCGTCCCCTCACAACACCAACAGCAAAAACGAGTCCCCACTTCTGCTAGCGGTCAGGGTTGGCTCCTATGACATGGTACTAGCGCTGATACTAGGCGGTGCGTTTGTGGAACAGGTGTGTCTGAAAAAGTGGACGGCCACTCACGAGGCAGCCAAGGTGGGCTGTGCTGACATCCTGATGTTGCTCCTGAGGCATGGTGGGAAGGTCACAGCTCGAGACATGCACGGTGTCACACCACTGGGAATCGCTGCTGAGTTTGGCCATACTGACATCTTGGAAATCCTTATTCAAAATGGGGTTGATGTTGCTGCACAGGCCGCCAATGGAGACACAGTGCTATATGATGCAGCAGGCTCAGGGAACCTTGACTGCATCCTCCTGCTCCTTCGTCACGGTGCAAATCCTAATGTGGCCAGTTTCGCCTTTCAGCTTCCCATTCATCGTGCTGCATATGAAGGCCATTATCTAGCTCTGAAAACTCTGATCCCTGTAACAACTAAGAGGGCCATCCACCAGTCTGGGATGAGTCCGGTGCACTCCGCTGCAGACGGAGGCCACGCTTCCTGCCTGAATTTACTTATTGAGGAGGGCTTTGATGTCAACTCTCTTCTGGGTGACCACATTTCCAGCAACTATGGTGACATGAGGAAGACACCGCTGTATTTTGCAGTGTGTAATGGTGATGTCACATGTGCAGAAATGCTGCTGGGGGCCGGGGCAAATCCTGACCTCGACCCTCTGTTCTGCCTCCTCGTAGCTGTGAGGGCCAGCCATTACGAGCTTGTGCGGCTGTTGCTGGCCCACGGCGCCAATGTGAACTGCTTCTTCACAGCTATCTGTGACACGGTGTTCCCCACAGCTCTACAGTACTGTCTTCATGACGAAATAATGATGCGTTTATTACTCAACAATGGCTATCATATTGAAAGTTGCTTTCAGTGTGAGCACAACTTCTGCATTTTTACACAGAGCTACACTACTGCCGATGACACTTGCAGCTACTTGAACAAAGTGACGTTTTGTGATTTCATCAGTGTGAGCTGGTTGAAGCACCTGGTAGGACGGCTTGTACGAATTCTTCTAGACTATGTGATACACGTTCCCATCTGCCCCAAACTGCAGAAGATCTTAGAGACCCAGAATGAGTGGCCCGAGATCTGTGACATTCTTAGAAACCCACACTGTCTGCAACATCTGTGCAGGCTGGCTATAAGGAAGAGGATAACCCTGAGAAGACTAAACAACACCAGATTTATGAGTGCACTTCCTTTCCCCCCTGCGTTAAAGAACTATCTAATCTACAAGGAGTATGACTTGTATGgacaaatgaaaatgtgaatttgTATATGGAATGTATAATGGTAGAATGTATAATATTAGCTATTTTCTGGTACTGTTGTTTTCTACTAGTTTAATGTCATCatgtattaaaaacagaaattggTTAAAGTTGAAAATTGTCAGTGATATTACAGTTGAGATCAAAAGTTACCTAGGACAAAGACATTTAAACTCAATTTTCTTGTTACCTTACTTTTCCTGACACACtttttctatgggattcaggtcagagctttgtaatgGCCACTCTAATACTTTCATTTTGttatctttaaaacattttgttacaaTTTTCACGTTTTAATTTTCTGGCAGATGTCTTGAAGTGTTCCTTCGGtgtttctagataatcctccttcctcatgatacCATGTATTTTCTGAGTctcttttccagcaaaacacttccacaacatgatgctgccacccccatgcttcacagttgggttTGGTGTTCGTCAGcttaaaagcctcaccctttttTCTCCATATATAGTGCTGAtatcattatggccaaacaggTCAATTTTTGTTCAACAGTTCGacaggtgtatgtaaacttttggcctcaactgtataaAGAGTGatgatatatattttgtttttatacattgtTCAAAAACCACTTTGGCTTGGTACACAAACAACTtagtattaaaaaaactttttgattAATTGCttgtaaacacacataaac

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 15-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10337 ASB15; ankyrin repeat and SOCS box protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313381.1 True 2500 mRNA 0.45 9 10451578 10461046

Neighbor

gene id symbol gene type direction distance location
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding downstream 676 10447665 ~ 10450902 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 435788 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 553626 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 597249 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 708900 9707450 ~ 9742678 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 9490 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 71735 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 157872 10618918 ~ 10629763 (-)
ptprb ptprb,LOC107562139 coding upstream 323282 10784328 ~ 10828385 (-)
ptprr ptprr coding upstream 369840 10830886 ~ 10885436 (-)
G280389 NA non-coding downstream 15732 10430631 ~ 10435846 (-)
G280233 NA non-coding downstream 363458 10087849 ~ 10088120 (-)
G280228 NA non-coding downstream 373222 10078086 ~ 10078356 (-)
G280002 NA non-coding downstream 446766 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 504042 9947331 ~ 9947536 (-)
G280398 NA non-coding upstream 2908 10463954 ~ 10465630 (-)
G280360 NA non-coding upstream 7640 10468686 ~ 10470375 (-)
G280527 NA non-coding upstream 315717 10776763 ~ 10777897 (-)
G280615 NA non-coding upstream 322315 10783361 ~ 10784293 (-)
G280640 NA non-coding upstream 445127 10906173 ~ 10908630 (-)
LOC113532274 NA other downstream 155380 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 559192 9878481 ~ 9892386 (-)
G279415 NA other downstream 1243015 9207351 ~ 9208563 (-)
G278912 NA other downstream 2231898 8218561 ~ 8219680 (-)
G278634 NA other downstream 2383501 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 534059 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 618122 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 777889 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1125258 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 1196844 11657890 ~ 11660327 (-)

Expression


Co-expression Network