ppfia2 (ppfia2,LOC107680027,LOC107694182)


Basic Information

Item Value
gene id ppfia2
gene name ppfia2,LOC107680027,LOC107694182
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3545076 ~ 3691686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313387.1
ccactctctccactctctccactctctccgCTCTCTCACACTGGGccgttttttttccttccacacAGTGATGTGGATTTCAGCAGGAGCACAATGATGGAGCTCAGAGGATTAAGATCAGGATCAGGAATGTGAAAGATGCCCGCTGTGGATCTGGGATTCAGTCGGGATTGGGTCGGAGAACCGCACAGCTGGGAATACTGATCTACCGGAGGAGACAGAGGACGAGGAGGAAGCAGTAAAGATGATGTGCGAGGTGATGCCCACGATCAGCGAGGACACGGCCATGAGCCAGCGAGGTTCTCAGAGCAGTTCCTCGGACCCGGACTCGCACTTTGAGCAGCTGATGGTGAACATGCTGGACGAGCGAGACCGTCTCCTGGACACGCTCCGAGAGACGCAGGAGAGCCTCGCCCTCGCCCAGCAGCACCTGCAGGACGTCATGTACGACCGGGACTCGCTACAGCGCCAGCTCAGCTCTGCACTgccacagGAGTTTGCGGCCCTGACGAAAGAGCTGAATGCCTGTCGAGAACAGCTGctggagaaagaggaggagatcTCAGAGCTCAAGGCTGAGAGGAACAACACCAGGctGCTGCTGGAGCATTTGGAGTGTTTGGTGTCTCGTCACGAGCGCTCCCTCAGGATGACGGTGGTGAAGCGACAGGCTCAGTCTCCATCAGGAGTCTCCAGCGAGGTGGAAGTTCTCAAAGCTCTCAAATCCTTGTTCGAGCATCACAAAGCTCTGGATGAAAAGGTGAGAGAGAGGCTACGCGTGTCACTCGAAAGAGTCTCTGCCTTGGAGGAGGAGCTAACTGCTGCCAATCAGGAGattgtTGCCTTAAGGGAACAAAATGCACACATTCAGAGAAAAGTGGCATCAGGTGAAGGAGCTGAGGATCTGCTCGAAGGAGACGCACAGAAAGTCCATGGCAAGcgctTGTCAAACGGCTCGATGGAGTCCGGAGACGAGGCAAGTCAGGTGGTGGAGCTGCAGGAACTTCTGGAGAAACAGAATTATGAACTGACCCAGATGAAAGAGAGGATGTCATCTCTGTCGTCTCGCGTTTCTGAGGTGGAGCAGGAGCTCGAGACGGCGCGTAAAGACCTCATCAAGAGTGAAGAGATGAACACCAAATACCAGAGAGACATCAAAGAGgccatGTGTCAGAAGGAGGACATGGAGGAGAGGATCGTGACTCTGGAGAAACGTTACCTCAGCGCTCAGAGAGAGTCCACTTCACTGCACGACATCAGTGACAAACTGGAGAACGAACTGGCCAATAAGGAGGCTTTTCTTCGACAGatggaGGAGAAGAACAGGCAGCTGCAGGAGAGGTTGGAGTTGGCTGAACAGAAGCTGCAGCAGACGATGAGGAAAGCAGAAACTCTGCCGGAGGTGGAGGCAGAACTCGCACAGAGAATAGCAGCACTCACCAAGgCAGAGGAAAGACATGGCAGTATTGAGGAACGAATGAGGCATCTGGAAGGACAGCTGGAGGAGAAAAACCAGGAACTTTTACGGGCTCGtcagagagagaagatgaacGAGGAACACAACAAGCGTCTATCAGACACGGTGGATCGTCTCCTCACGGAATCAAACGAGCGTTTACAGCTCCATCTGAAGGAGAGGATGGCTGCTCTGGAGGAGAAGaatgtaTTAATTCAAGATTCAGAGAATTACAGGAAGCAGCTGGAAGACTCCATTCATGAAAAGtcCCAGTTGGCAGAGGAGATGGACAAAATGAGAGCTGAACTCGATCAGTTCAGAATGAGGGCGGAGCCAACACTGTCACGgtctcATCTGGATGCCTCCTCAGATCTGCGTTACTCTCTTGGTTCTCTTGCTGAGTCTCAATCTGATTATCGCTCCACTAAAGTGATGCACCGAACAAGAAGAGGACGCATGGGGCTACGCCGAGACGAAcagaagGCGAAGTCTCTGGGCGAACATGAGTGGCGCTCGCAGCAGCTCGGCGTGTTGGGCTCGCACCCGTTCGAGAGCGATACCGAGATGTCAGACATCGACGATGACGATCGGGAGACTTTGTTCAGCTCGATGGATTTGCTCTCGCCCAGCGGACATTCAGACGCTCAGACCCTCGCCATGATGCTGCAGGAACAACTCGACGCTATCAACAAAGAGATACGgctgATTCAGGAGGAGAAGGAGTGTACGGAGCAGCGGGCGGAGGAGATTGAACACCGTGTAGCCAGTGTGAGTTTAGAGGGCTTGAATCTGGCGCGTTCGCTCATCACTGCCTCAGCTACAGCGTCATCGCTcgcatcatcatcaccacccaGCGGGCACTCgtcccccaaacacacaccccgcAGCCCCGCCCGGGACATGGAGCGCATGGGGGTCATGacactgCCCAGTGACCTGAGGAAACACCGGAGAAAGatcGCAGCCGTGGACGAGGACGGCAGAGAGGACAAAGCCACCATAAAGTGTGAGACGTCTCCTCCTCCAACGCCTCGTCAAGTCcgcatgacacacacactgcctgctTCCTCTCACAACGACGCACGtctGGCCGCAGCGTTAGAGGCTGATGCAGCTCTGAGCAGTGTAGCCAGCAGTCAGGACTCGCTCCATAAACAACCGAAGAAGAAAGGCATCAAATCATCCATCGGCCGCTTGTTTggcaaaaaagagaaaggacgACTGGGACACATGGGAAAAGAGATGATGGGACCGGGACCAgGTGTTTCAGATGTGGAGTTGCTTGCTCAGGAAATGGCTGTGGGGAAACTGGGCACTCAGGCCGAGAAAGACCGCCGCATAAAGAAGAACGGGCATGAGTTGCTGGAGGAGGCGAGGAGGAAAGGATTGCCTTTCGCGCAGTGGGATGGTCCTACTGTTGTTGCATGGCTGGAGctgtggtTAGGAATGCCGGCGTGGTACGTGGCAGCGTGCCGGGCGAATGTGAAGAGCGGCGCCATCATGTCGGCTCTGTCTGATACGGAGATCCAGCGTGAGATCGGCATCAGTAACCCGCTGCACCGCCTCAAACTGCGTCTCGCCATCCAGGAAATGGTGTCACTGACCAGTCCGTCGGCCCCGCCCACTTCCCGAACTCCGTCAGGCAATGTGTGGGTGACACATGAGGAGATGGAAACACTCGCAGCTCCATCTAAAACGAAGTCAGAGTCTGAAGAAGGAAGCTGGTCTCAGacaTTAGCATACGGGGACATGAATCATGAGTGGATAGGTAACGAGTGGCTGCCCAGTCTCGGCCTACCTCAGTATCGCAGCTACTTCATGGAGTGTCTGGTGGACGCAAGAATGCTCGATCACCTGACCAAGAAGGACCTCCGAGTTCATCTCAAAATGGTGGACAGCTTCCACAGGACGAGTCTTCAGTACGGGATCATGTGTCTGAAAAAGCTCAACTACGACCGCAAAGAGCTGGAGAGACGGCGAGAGAACAGCCAGCATGAGATGagagacgtCCTGGTATGGATAACGAAAGGCAGGATTCGCTGTTCTCAGAGCATCGGGTCTCCTCCGCGATCACGCAACATCCTTTGCTAGAAAGCTGGAGTTCACGGAGCTGATCGCCTCTCTACATAACACTCACACTACAGCAGCCTCCTCCCTCTGTTACTGCAGATCCCCACCCAGAACACTCAgGCTCGTCAGATTCTGGAGAGAGAATATAACAACCTGCTGGCGTTGGGTACAGAGAGACGGTTGGAcgagGATTTCCGTGGCCCATCGTGGAGGAGACAGTTTCCCCCACGTGATATTCACGGGATCAGTATGATGCCTGGATCAGCAGAGACACTGCCGGCTGGGTTTCGCCTCAcaacatcagcacacacacaccgaattCCAGCAGACGAGGTTGGACAGTTCCACTGTGAGGACATACTCATGCTGAGAGAGGGACAACAGGGACTCACAactccGTGTTGCGTAGTTGATTGTGATGGTGACGTCGGGGAACAGAgatctgctcacacacactgccaagAGAACACGCGTTGCCCGGACAGATGGGGCCAAAATGTAAAGCGCCAAGGTGCTCTCCTGCCCCGCCCACATGCCCCGCCCACATGCCCCACCTCCTGCCCCGCCCTCTCTACACCAGAGTGACTGTACAGGATTATAGATACACAGTTTTATATACAAATCTCTATCATCTACAGACACACTGCTGTATacaacactgactttattcctGCTGACTCTGTGCACATTTAACGTCacgcttttatttctttcttccacacctcctgctcacacacatgcacatgcgcgcacacacacacacacacgcacacacacacctgactcaaACCGCCGCGGTCAGTGTGTTAGAAGAGCATACAGATGAATGTGTGAAGGTGTAAGAGGTTCAACACTGCTGCTTTAAGAAACTACGTGCTGTTAGAGTTTTAAATTCCAAGTGCACTACCACAAactgttttaattattaaagttattatatatatatatatatataaaaatgaattattcacTAATAAAGTTATGTGATCTGTTATTggataaattaaataacacgTAGAGACAGCATTAGCTGTTTTAGTTTTAACAAATCTTTTAACTTAAAAGAtatagtatttaattttatttggatATTAACGAGTTGATAATGTTATACTGCCACCGACAGAGTGATCAGCAGTAGCTACACGACATGTTTATAtcacataaataataattttattagtcACACTTTGTTCCATGGTTGTTTTTCAGCTCTATTGTTGCAAGATTTTTGACCCCTTTTGGCTTCCGTACGCCACACAACACTGACACCTCGTTTTTTTAATGCCTTGAAcattctccatcttttttttattctttttgatTTTCCTGGTTCAATTCTCACTAACAGAAATCATTCCTGTAGTTCAAGGTGTTCCACACGGTTCTGTTCTGGGCCCgtctcatttttattaattacactaCTCTGAGGTCATGTTACAATGTGGCATCACAGTGCTAATTTCTACTGTTATGCCACTGATGCCTAGATTTACATTAATATGGACTCTTCCACATCCCAGCTGAACCATACTAACATTAAGCTAGCGAAGAAAGTGACGTAACTAAAGCTATGCTAGCAAAGTAAGTAAAGTTACCTAACTAAAGCTAGCAAATCAAGTAATGTTACTAAAGTTAAGCTAAAAGGAAGTAACATTACAGACGTTAAGACAGTAAAGCAAGTAACATTACTAAAGTTAAGCTAagtaatatttcaaaacaaagtaataTTATAAGTGAGTGCAGCAAGTAATGTTACTAAACCTAAAATAAAAGGAAGTAACATTACAGACATTAAGTGAAGAAAGTAACATTGCAAAATTTACACTAATACAGTTTGTAATATTCCATAACTAAATCAAGTAATGTTACTAAATTTAAACTAAAAGCAAGTAGTACAGAAGCTAAGCTAGTGAAGAAATTAACATTACTAAGATTAggctagtaaaaaaaaaaggatgtaacAGTACCGAGGTTAAGACAATAAAGCAAGTTGTTGTAATGTTACAGAAGTTAAGCTAGTAACATAAATAATATTGCAAAACAAGCAAAGTAATATCACAAGCTAGTGAAACAAGAAAATGTTACTAAGCTTAAGATAAAAGGACGTAACAGTACAGAAATTAAGCTAGTGAAGAAACATTGCTAGAAGAAACTTTGAAGAAATAGTATGTAATATTACATAACTAAATCAAATAACTTTACAAAATTTACGCTAAAAGGAAGTAGTACAGAAGCTAAGCTAgtgaaaaaattaatgttaCTAAGATTAGGCTAGTAAAGTGATATTTCAAAACCAGCTAGTAAATCAAAGTTTCTACTGGCTTGTCAAGCTAAAAA

Function

symbol description
ppfia2 Predicted to be involved in synapse organization. Predicted to be located in synapse. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA2 (PTPRF interacting protein alpha 2).

NR:

description
PREDICTED: liprin-alpha-2-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313387.1 True 5866 mRNA 0.48 33 3545076 3691686

Neighbor

gene id symbol gene type direction distance location
pawr pawr coding downstream 298080 3205288 ~ 3246996 (-)
LOC117599441 LOC108261611 coding downstream 867044 2672021 ~ 2678032 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding downstream 875740 2668355 ~ 2669336 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding downstream 877561 2664397 ~ 2667515 (-)
LOC117599438 NA coding downstream 914748 2628665 ~ 2630328 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding upstream 47198 3738884 ~ 3755857 (-)
orc5 orc5 coding upstream 106655 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 165829 3857515 ~ 3906653 (-)
kdm7aa kdm7a coding upstream 227616 3919302 ~ 3945301 (-)
cd36 cd36 coding upstream 353020 4044706 ~ 4060514 (-)
G276049 NA non-coding downstream 129936 3414868 ~ 3415140 (-)
G276038 NA non-coding downstream 172058 3372624 ~ 3373018 (-)
LOC113523901 NA non-coding downstream 188643 3355454 ~ 3356433 (-)
G276021 NA non-coding downstream 323872 3217719 ~ 3221204 (-)
G276022 NA non-coding downstream 326026 3218189 ~ 3219050 (-)
G276342 lhfpl3 non-coding upstream 110707 3802393 ~ 3815365 (-)
G276353 NA non-coding upstream 120854 3812540 ~ 3813351 (-)
G276384 NA non-coding upstream 209576 3901262 ~ 3904931 (-)
G276387 NA non-coding upstream 221853 3913539 ~ 3913989 (-)
G276388 NA non-coding upstream 223642 3915328 ~ 3916117 (-)
G276075 NA other downstream 6333 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 51060 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 160153 3299257 ~ 3384923 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other downstream 210059 3226595 ~ 3335017 (-)
G275981 NA other downstream 343779 3142534 ~ 3201297 (-)
G276340 NA other upstream 44444 3736130 ~ 3737077 (-)
golgb1 LOC108279640 other upstream 67525 3759211 ~ 3829402 (-)
G276421 NA other upstream 390592 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 606174 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 639574 4331260 ~ 4343545 (-)

Expression


Co-expression Network