LOC113531850


Basic Information

Item Value
gene id LOC113531850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4943549 ~ 4945278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403297.2
CAGTGTTCATTCTGAGGATTaggaaataaatgttattcattGACACACgcttactttttactttttacttttcccTCTGTCCCACAGCTCGACTCCATCTCTTCTGCTTTTCGCTGAACTGAGTTGTTCCTATTTGTACTCTGTAAGGCGTTTATACACACAGAACTACTGGTTTAGGATcgttttatgttatttatttggaAATCTGCCACAGTAAGggggccaagcactgaaggtgccTCCTATGGAACTGTATATTTTCTTCTTGCTGGGAGTCTACGGCACTTCGTacgtttttaatgaaatttggcacagCGATAGAGGACAGTCTCAGCTACCAGCACAGCAGTTTTGGTGTACACCACTCAAGCTCTCTAGCACCACCAATATGCAAAATTTggacatacatttacatttacatttatggcatttggcagatgctcttatccagagctacttacagaagtgctttgaagtctctatcaataaatacattctgatactggttcgctaggtcagggactaataATACCACCAGTCTATAAACTCTgctggggaggtaatatagtaaaatgcactcagacaatacaaagttgttgtttttttaatattttgttacgTTTACAATAATAACTCTCAATGTTGTAGAAACGCGattccattttcctctgattctTTGGGTCAAGCCGAGTTCAAGGGACACCATGATGTTTTCCACCATACAATTATACACAGCATCAGGACACCAATCTGAACAGAACCTAATTCTCAGATTTTCGATATGTGGGATGTTTCATCCGTAACGTGGATGTGAATTTGATAATGaagtcaccaaacaggaagtgaggttaTGTCTCAGCAATGCTTTCACATATTGAAAGAAACTTGTCACATATGTTTAGTAAAATGACCTAATGTTATGAAACTAGCTTTGAGTTCATTTGCAACATGGAAGGGCtcctgaaaacaggaagtgaggtaaTATCTCAacaaagaatttatttttaaccttcAAATTTACTATCGGGGAACAAATCCTGATGAAGTCAATGGCTTCAGTGCTATGGGGTGAGGCCgaaaagtgcttggccccttaataatcatcattatcattattattattagtagtagtagtagtagtatatttggctcattttttttttttaaacaagtacAATCATATACTCAAGCTTAAAATTGTTTTAGTAGTTTTAGTAATTGTCTTAGTAGTCTTTTGAGTTTTAAAACAATCTAACCAAGAGAAACATCAGTTGAATTTGCGTATGTTCAAGatattttacatgaaaatatatcaattttttacatttttaacttgAAGCAGACAATAAACTCATACTTCTTTTTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism
ko00830 Retinol metabolism
ko00982 Drug metabolism - cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403297.2 True 1367 lncRNA 0.36 2 4943549 4945278

Neighbor

gene id symbol gene type direction distance location
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 4736 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 25769 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 150752 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 883035 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 998248 3919302 ~ 3945301 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 9013 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 43203 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 135534 5080812 ~ 5315907 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 394495 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 460196 5405474 ~ 5419057 (-)
G276753 NA non-coding downstream 62541 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 66757 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 99178 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 144392 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 356557 4586256 ~ 4586992 (-)
G276980 NA non-coding upstream 161602 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 179195 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 370629 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 410622 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 413173 5358451 ~ 5359228 (-)
G276650 LOC108279602 other downstream 204550 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 356453 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 460984 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 486428 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 20954 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1035860 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1037014 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2476710 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3021541 7966819 ~ 7970571 (-)

Expression


Co-expression Network