LOC113532316


Basic Information

Item Value
gene id LOC113532316
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19580854 ~ 19588244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403329.2
TGTGAAGAGGTTCAGCTTGAAGTGAAGCCTCAAACACCACATGGGTTTTCAGAGTGGCATCTGATGGAGGAGTGTGACCACTGGTTGCTTCTTTTGCTTTCTATCTGCAGGACACTCCCTCATAGCAAATGAGTGATGGCCAAGTGCCAGCCCGCATTTACCACTTTTACCTTTTACCGCTGTGGAATGTGAATTACAACTCAACATTGGGGAGACCGCATCTCAGGCATGATATGGACCAGAACGTACAGCTGGAAGGAAAAGCAGTTCACCTGTGAAGAGGATGAGATGAGGGCCTTGCTTGTCTCCTGTAAAAAAGAAACTGCAGAGTGGAAGAAAGAACAATGTGAGCTGGGCAGACATACAATAACCATGTGTCAAGCTGCATGGAGAACATTGTGGCTGTTCTCCCAAGAACCTCCTGGCTTTCACACAGAGCTGAGGAAATTAATGGACCTTGTTTACTGGTGTGTATGTGGGTCTGAAGGGAGAGATTTCTGAAGGGGAGAGATGCTGTCCTTATTTCATCTTCATTTTACTCTACCACaccaaagttaattattttccaataacagcacatcctgaaatgtcttattcctctta
>XR_004579877.1
CGGGAGAAAGCAGCTTCAGAGTGTCTCTCCCTCCCTGCCCTGTTTACTCCTTTTTGCACCACtcgaaaaaaaaacaccttcggAGAGACACTCCCTCATAGCAAATGAGTGATGGCCAAGTGCCAGCCCGCATTTACCACTTTTACCTTTTACCGCTGTGGAATGTGAATTACAACTCAACATTGGGGAGACCGCATCTCAGGCATGATATGGACCAGAACGTACAGCTGGAAGGAAAAGCAGTTCACCTGTGAAGAGGATGAGATGAGGGCCTTGCTTGTCTCCTGTAAAAAAGAAACTGCAGAGTGGAAGAAAGAACAATGTGAGCTGGGCAGACATACAATAACCATGTGTCAAGCTGCATGGAGAACATTGTGGCTGTTCTCCCAAGAACCTCCTGGCTTTCACACAGAGCTGAGGAAATTAATGGACCTTGTTTACTGGTGTGTATGTGGGTCTGAAGGGAGAGATTTCTGAAGGGGAGAGATGCTGTCCTTATTTCATCTTCATTTTACTCTACCACaccaaagttaattattttccaataacagcacatcctgaaatgtcttattcctctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403329.2 True 603 lncRNA 0.45 3 19580854 19588244
XR_004579877.1 False 579 lncRNA 0.45 3 19580854 19582953

Neighbor

gene id symbol gene type direction distance location
cbll1 cbll1,LOC108438797 coding downstream 61246 19516354 ~ 19519608 (-)
def6c LOC108279918 coding downstream 136403 19432886 ~ 19444451 (-)
atxn10 atxn10 coding downstream 152591 19411830 ~ 19428263 (-)
pparaa ppara coding downstream 225716 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 245614 19314613 ~ 19335240 (-)
cfap54 cfap54 coding upstream 45178 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 83281 19671525 ~ 19676383 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 271257 19859501 ~ 19868173 (-)
si:dkey-39a18.1 LOC108279454 coding upstream 303668 19891912 ~ 19896958 (-)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 310016 19898260 ~ 19922472 (-)
G285331 NA non-coding downstream 20235 19560412 ~ 19560619 (-)
LOC117599445 NA non-coding downstream 150295 19429170 ~ 19430559 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 172049 19408270 ~ 19408805 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding downstream 174726 19405903 ~ 19406128 (-)
G285287 NA non-coding downstream 175537 19405079 ~ 19405317 (-)
G285361 NA non-coding upstream 88596 19676840 ~ 19677595 (-)
G285362 NA non-coding upstream 122653 19710897 ~ 19719135 (-)
G285437 NA non-coding upstream 328365 19916609 ~ 19920334 (-)
G285425 NA non-coding upstream 365369 19953613 ~ 19960579 (-)
G285428 NA non-coding upstream 374715 19962959 ~ 19967411 (-)
LOC113532190 NA other downstream 833021 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1368461 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1369150 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1488310 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1490232 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 90039 19678283 ~ 19735232 (-)
G285607 NA other upstream 724823 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1872582 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2897992 22486236 ~ 22489467 (-)

Expression


Co-expression Network