LOC113532334


Basic Information

Item Value
gene id LOC113532334
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15209348 ~ 15213255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403332.2
GTTTATCAGTGCAGGTAACCACCAACAAGAAAACACAGATCCCCACACATACATCTCCTATATTAAGTCAGTTTGATTCACAAACGAGtACACAGGGTCACCGGGTAGCCTGGAGCCacacacaatttggaaatgctaatcagcctacaacggatgtctttggactgggagaggaagCTGGAATGCCCAGAAGAAActcctgaagcacagggagaactcCGCAcacaaacccccaaccccagaggtgcaaggcgAACGTGCTAACCAATAAGCCACCTGTCCTTGCACACTAGAAGACAACCATAGGTCTATTGCCTGATGTAGATGAAGGCCCTAGCAGCTGTGAGGAAGCTTTAATGTGACTTTCCAGCCAGCAAAATTAATGTGATAAACAGATATTTGtatgtttgatgtttgtttgATGTTTGTTTGAAAATGGACAGGACAAGAAAAATATTGATCAGGGAGGCTACCAAGATATCTTTCTCACAGGAATTAGTCACTCGCTGCATGGAACAACAATCTCCTGCATCCTGCATTTCTGGATAAGAATAGGGTGTCACAATGAAGGCATTTCTCCAAAAATGTGTTATCATCTGATAACACAATTCTAGATTGTTTGAATTTGGTGactgaagataaatgattaaataatatgaAAGAGGTTGTCCCTTTCTGCCTCTTTCACTGACATTTATTAGCCAAAAATGTCACAGAGCTCAGACACTGGTTATCTATaaattagagatggcactgaaTATTTATCTGAAAATGAGAGAATCTGTTTGTTTGGTCGGTGTAAATGTTCAGTCATTAGATTAAAAACACTGgaagaaataaaattcatttaaatttcacACAAATGCATATTCCCTGGACTTTTAAGCAGTTAACATTTCAAGATGACGGAACTACATTACGTTATGATATAGATCAAATCCAGATCTAGCCTATTTAACTACACATATTTTAGACATTGAGATCTGTGAGTTT
>XR_003403333.2
GTTTATCAGTGCAGGTAACCACCAACAAGAAAACACAGATCCCCACACATACATCTCCTATATTAAGTCAGTTTGATTCACAAACGAGtACACAGGGTCACCGGGTAGCCTGGAGCCacacacaatttggaaatgctaatcagcctacaacggatgtctttggactgggagaggaagCTGGAATGCCCAGAAGAAActcctgaagcacagggagaactcCGCAcacaaacccccaaccccagaggtgcaaggcgAACGTGCTAACCAATAAGCCACCTGTCCTTGCACACTAGAAGACAACCATAGGTCTATTGCCTGATGTAGATGAAGGCCCTAGCAGCTGACAAGAAAAATATTGATCAGGGAGGCTACCAAGATATCTTTCTCACAGGAATTAGTCACTCGCTGCATGGAACAACAATCTCCTGCATCCTGCATTTCTGGATAAGAATAGGGTGTCACAATGAAGGCATTTCTCCAAAAATGTGTTATCATCTGATAACACAATTCTAGATTGTTTGAATTTGGTGactgaagataaatgattaaataatatgaAAGAGGTTGTCCCTTTCTGCCTCTTTCACTGACATTTATTAGCCAAAAATGTCACAGAGCTCAGACACTGGTTATCTATaaattagagatggcactgaaTATTTATCTGAAAATGAGAGAATCTGTTTGTTTGGTCGGTGTAAATGTTCAGTCATTAGATTAAAAACACTGgaagaaataaaattcatttaaatttcacACAAATGCATATTCCCTGGACTTTTAAGCAGTTAACATTTCAAGATGACGGAACTACATTACGTTATGATATAGATCAAATCCAGATCTAGCCTATTTAACTACACATATTTTAGACATTGAGATCTGTGAGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403332.2 True 993 lncRNA 0.39 3 15209348 15213255
XR_003403333.2 False 892 lncRNA 0.40 4 15209348 15213255

Neighbor

gene id symbol gene type direction distance location
LOC113532053 LOC108279522 coding downstream 70871 15122734 ~ 15138477 (-)
LOC113531721 iapp coding downstream 90787 15116227 ~ 15118561 (-)
pyroxd1 pyroxd1,LOC108279593 coding downstream 98083 15101356 ~ 15111265 (-)
LOC113531968 LOC108279915,LOC107597036 coding downstream 130561 15059512 ~ 15078787 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding downstream 161877 15032648 ~ 15047471 (-)
LOC113532243 LOC108279995 coding upstream 681 15213936 ~ 15236310 (-)
LOC113532267 muc19,LOC108280038 coding upstream 23287 15236542 ~ 15263393 (-)
LOC113532250 NA coding upstream 112118 15325373 ~ 15336933 (-)
alg10 alg10,LOC108427075 coding upstream 325802 15539057 ~ 15544883 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding upstream 341018 15554273 ~ 15563716 (-)
G282718 NA non-coding downstream 103353 14812922 ~ 15105995 (-)
G282673 NA non-coding downstream 469911 14739216 ~ 14739437 (-)
G282649 NA non-coding downstream 478344 14715045 ~ 14731004 (-)
G282410 NA non-coding downstream 818791 14389823 ~ 14390557 (-)
G282409 NA non-coding downstream 835835 14372731 ~ 14373513 (-)
G282950 NA non-coding upstream 57739 15270994 ~ 15271200 (-)
G282999 NA non-coding upstream 137451 15350706 ~ 15353441 (-)
G283022 NA non-coding upstream 174693 15387948 ~ 15390101 (-)
G283081 NA non-coding upstream 303969 15517224 ~ 15521690 (-)
G283218 NA non-coding upstream 541062 15754317 ~ 15754605 (-)
LOC113531972 muc19,LOC108280038 other downstream 25273 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 3456435 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3549021 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3621324 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 3949936 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 1187666 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1625280 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1745257 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2765508 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2814479 18027734 ~ 18067585 (-)

Expression


Co-expression Network