LOC113532391


Basic Information

Item Value
gene id LOC113532391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13146282 ~ 13147358 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403338.2
AGTGCGTCACTTCCGCTGCCTGCGTACATCTGGGTCTCCAACGGTGTTTAAGGTACGGGTTGGCTTCATAGCTTTGGGACTTTTTGTGCTTGTACCAGCACATATGTTCACCATACTTCTCAGTAAGCCAGCGATTTGGGACACATGCTGTGGAGTGTACCGACTGAAAGGGGCATATCATTGGGGCTGTCGGATGTGTTGATACGAATTGTGCAAGCTACATGGCTCTTGGCGGAGCGTGCATGAGGGTTACAACTGCTTTGCTGCTTCATGTTGCAACTGCTTTGCTGCTTCTGATGCAACTGCTCTGCTTCTTGCTGGCGTGACAAGCTTCTCTGCTTCTGGTTGGGGTGGAAGGACTTGCTTTCTATTTCTGCGGGGAAAGTTTGCGGTTTCTGGGTTCTATCAGGAGGCCGCATTCTGTTTTGTCGGAGTATTGTACATATTGCGTGCTGgttactgtttgttttgtttgtatgtgtgtgtctgtgttttttttctttctttcctttcattatTTGTTTGGAGTGCAGCAGTCTAATTGGAGCTGAGGATGATGGCAGAAATATTTCTACCTCCTCTCGGTTGGTGGTGGTTTCTTCACTGAGTGCTGTGttcatcactttggtagagtgTGCATGTGGGTGATGCTCAAGTGTATAGCTGGGGGTGTAGAGAGTGAGAGGTCttgctctgtctttctttgtgcTGGTAAGCCTCAGCTCTGAATGACTACTAGTTGACtggtgtgtttgtctgtttcttttgtCTGCTTCCTTCATATGTTTTTGTATGCAGTAACCATGTGACACACCTTACTCACTCTTTATCCCCTatcttaatattttaaagaGTAAGCCTAGGCATATGTTTTATGTGACTGCTGGGTGAat

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403338.2 True 893 lncRNA 0.46 3 13146282 13147358

Neighbor

gene id symbol gene type direction distance location
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding downstream 36068 12962716 ~ 13110214 (-)
prl2 LOC108279639 coding downstream 326576 12809321 ~ 12819706 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding downstream 342860 12787882 ~ 12803422 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding downstream 509866 12592087 ~ 12636416 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding downstream 557602 12584837 ~ 12588680 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding upstream 41504 13188862 ~ 13198925 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 129568 13276926 ~ 13304279 (-)
depdc4 depdc4,LOC108427048 coding upstream 157096 13304454 ~ 13310263 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding upstream 178043 13325401 ~ 13338373 (-)
vezt vezt coding upstream 197386 13344744 ~ 13374285 (-)
G281527 NA non-coding downstream 668653 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 687190 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 777017 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 892127 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 1052223 12093857 ~ 12094059 (-)
G281964 NA non-coding upstream 21317 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 111794 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 172815 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 260255 13407613 ~ 13409326 (-)
G282060 NA non-coding upstream 280299 13427657 ~ 13427872 (-)
dusp16 dusp16 other downstream 1393369 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1485955 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1558258 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1886870 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2052106 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1992567 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3253563 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3691177 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3811154 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4831405 17978763 ~ 17988280 (-)

Expression


Co-expression Network