LOC113532437


Basic Information

Item Value
gene id LOC113532437
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6033029 ~ 6033193 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403345.2
TGACTTACCTGGCAGAGGCGATACCATGATCAAGAAGGTGGTTCGCCCAAGGCAAGGCTGAACCCCTGTCACACTTACgggaagtggtggctcagtggttcaGTAGGTTGGTGGTTCAAGCcccagtactgccaagctgccactgttgggacTTTGAGCCCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403345.2 True 165 ncRNA 0.55 1 6033029 6033193

Neighbor

gene id symbol gene type direction distance location
ucn3l ucn3 coding downstream 21486 6010290 ~ 6011543 (-)
si:dkeyp-38g8.5 LOC108280028 coding downstream 242040 5784910 ~ 5790989 (-)
LOC113532275 LOC108279443 coding downstream 407330 5565677 ~ 5625699 (-)
pah pah coding downstream 482076 5529156 ~ 5550953 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 504209 5514082 ~ 5528820 (-)
trnam-cau_46 NA coding upstream 69883 6103076 ~ 6103147 (-)
lrguk lrguk coding upstream 100366 6133559 ~ 6163886 (-)
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851 coding upstream 133343 6166536 ~ 6316303 (-)
cax1 LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270 coding upstream 775608 6808801 ~ 6827179 (-)
smo smo,LOC107725609,LOC107729864,LOC107690544 coding upstream 795560 6828753 ~ 6842024 (-)
G277567 NA non-coding downstream 35637 5960674 ~ 5997392 (-)
G277577 NA non-coding downstream 44685 5978950 ~ 5988344 (-)
G277500 NA non-coding downstream 251858 5778002 ~ 5781171 (-)
G277502 NA non-coding downstream 266762 5761660 ~ 5766267 (-)
G277519 NA non-coding downstream 301960 5730845 ~ 5731069 (-)
G277878 NA non-coding upstream 750466 6783659 ~ 6787471 (-)
G277881 NA non-coding upstream 758069 6791262 ~ 6791475 (-)
G278225 NA non-coding upstream 844559 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 1038553 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 1195812 7229005 ~ 7229440 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 27900 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 48465 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 1048714 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 1294030 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 1550464 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1388795 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1933626 7966819 ~ 7970571 (-)
G278634 NA other upstream 2019895 8053088 ~ 8068077 (-)
G278912 NA other upstream 2185368 8218561 ~ 8219680 (-)
G279415 NA other upstream 3174158 9207351 ~ 9208563 (-)

Expression


Co-expression Network