LOC117599445


Basic Information

Item Value
gene id LOC117599445
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19429170 ~ 19430559 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579862.1
GTTCAGGACTGCAGCCTCTCCTGAtttagatggatgaatggatatcAGATGGCCTGGTTTATGCTGTAGAGATGCTGTTGGTGGCTGACTGCTTTACTGAGTTACAGCCAGAGCTTGTGACCATTTCTCATCAACATACACTGAGTTGTCCTTGTTTCAGGTGGGGGGAAACAGTGACAGTGGTTACCATGTTTGCCTCTtgcctctggggttgggggttcggaTCTCGCCTCTGCCCTGCATGTGCAGATTTTTcatgctctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579862.1 True 265 lncRNA 0.50 3 19429170 19430559

Neighbor

gene id symbol gene type direction distance location
atxn10 atxn10 coding downstream 907 19411830 ~ 19428263 (-)
pparaa ppara coding downstream 74032 19335661 ~ 19355138 (-)
mcm10 mcm10 coding downstream 93930 19314613 ~ 19335240 (-)
LOC113531838 NA coding downstream 144671 19283150 ~ 19284499 (-)
LOC117599574 NA coding downstream 156476 19271595 ~ 19272694 (-)
def6c LOC108279918 coding upstream 2327 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 85795 19516354 ~ 19519608 (-)
cfap54 cfap54 coding upstream 202863 19633422 ~ 19664949 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding upstream 240966 19671525 ~ 19676383 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding upstream 428942 19859501 ~ 19868173 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding downstream 20365 19408270 ~ 19408805 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding downstream 23042 19405903 ~ 19406128 (-)
G285287 NA non-coding downstream 23853 19405079 ~ 19405317 (-)
LOC113532309 NA non-coding downstream 43307 19356560 ~ 19385863 (-)
G285245 NA non-coding downstream 138364 19288591 ~ 19290806 (-)
G285331 NA non-coding upstream 129853 19560412 ~ 19560619 (-)
LOC113532316 NA non-coding upstream 150295 19580854 ~ 19588244 (-)
G285361 NA non-coding upstream 246281 19676840 ~ 19677595 (-)
G285362 NA non-coding upstream 280338 19710897 ~ 19719135 (-)
G285437 NA non-coding upstream 486050 19916609 ~ 19920334 (-)
LOC113532190 NA other downstream 681337 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1216777 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1217466 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1336626 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1338548 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 247724 19678283 ~ 19735232 (-)
G285607 NA other upstream 882508 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2030267 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3055677 22486236 ~ 22489467 (-)

Expression


Co-expression Network