LOC117599455


Basic Information

Item Value
gene id LOC117599455
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8698430 ~ 8698791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579873.1
AGAGCGGGGCAGTGCCAGgcagtgccaaaaaaaaaactttataagtCGGAGAAAAGTAGCAAGCGATGGAGGAAAATCAGGAAGACGGAACTCCTACAGCGTCCCTGGTTTCCAACACgcgaaaagagagagagagagaaagaaaatgtgctGCACAGAAGACGACGAACGGGAGGAGACCTGCGCGCGCGGCGACGCGGAGACGCACAAATGGCCCCGATCCGCTCGCGTGGTTAAATAAAGCGAGGGCCGGAGAGGTGCtggtgtaaagaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579873.1 True 278 lncRNA 0.53 2 8698430 8698791

Neighbor

gene id symbol gene type direction distance location
hsp90b1 hsp90b1,LOC107656288,LOC107726017 coding downstream 64475 8626921 ~ 8633955 (-)
sbf1 sbf1 coding downstream 149802 8488152 ~ 8548628 (-)
parp12b LOC108279682,LOC108428170 coding downstream 215859 8473937 ~ 8482571 (-)
si:dkeyp-27e10.3 kiaa1549,LOC108279680 coding downstream 226536 8443209 ~ 8471894 (-)
svopl svopl,LOC107656247,LOC107725968,LOC107744112 coding downstream 258634 8429495 ~ 8439796 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding upstream 468798 9167589 ~ 9188935 (-)
parietopsin LOC108279599 coding upstream 590304 9289095 ~ 9291409 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding upstream 639977 9338768 ~ 9347046 (-)
LOC113531956 LOC108279597,LOC108279598 coding upstream 652087 9350878 ~ 9359050 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding upstream 693238 9392029 ~ 9423268 (-)
G279064 NA non-coding downstream 86088 8612118 ~ 8612342 (-)
G278963 NA non-coding downstream 307871 8389498 ~ 8390559 (-)
G278920 NA non-coding downstream 458754 8238974 ~ 8239676 (-)
G278911 NA non-coding downstream 481137 8217013 ~ 8217293 (-)
G278520 NA non-coding downstream 819413 7796835 ~ 7879017 (-)
LOC113532431 NA non-coding upstream 110429 8809220 ~ 8809338 (-)
G279382 NA non-coding upstream 494825 9193616 ~ 9194003 (-)
G279588 NA non-coding upstream 637545 9336336 ~ 9337530 (-)
G279592 NA non-coding upstream 687342 9386133 ~ 9389747 (-)
G279620 NA non-coding upstream 785302 9484093 ~ 9484948 (-)
G278912 NA other downstream 478750 8218561 ~ 8219680 (-)
G278634 NA other downstream 630353 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 727859 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1198351 7421988 ~ 7500079 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2713866 5982292 ~ 5984564 (-)
G279415 NA other upstream 508560 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1179690 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 1557181 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2296314 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 2380377 11079168 ~ 11094176 (-)

Expression


Co-expression Network