LOC117599476 (LOC108279477)


Basic Information

Item Value
gene id LOC117599476
gene name LOC108279477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1261642 ~ 1262710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579887.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGCCCGAGAACTATGATGATGCAGTTACCAcggaaacaaacccaaacatcatcacagacagtccagaagattatgatgatgtcatcactgaggaac
>XR_004579888.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGCCCGAGAACTATGATGATGCAGTTACCAcggaaacaaacccaaacatcatcacagtagacagtccagaagattatgatgatgtcatcactgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579887.1 True 293 lncRNA 0.45 5 1261642 1262710
XR_004579888.1 False 292 lncRNA 0.45 5 1261646 1262710

Neighbor

gene id symbol gene type direction distance location
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding downstream 6456 1242138 ~ 1255186 (-)
LOC117599470 LOC107667668 coding downstream 84408 1175310 ~ 1177234 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding downstream 353795 907230 ~ 907847 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding downstream 354912 905247 ~ 906730 (-)
LOC113543469 LOC108279491,LOC108262260 coding downstream 567159 686036 ~ 694483 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 103401 1366111 ~ 1376319 (-)
LOC117599496 NA coding upstream 125486 1388196 ~ 1388678 (-)
LOC117599431 LOC108261705,LOC108261423,LOC108261555,LOC108279477,LOC108261687,LOC108261384,LOC108262265 coding upstream 129190 1391900 ~ 1395944 (-)
LOC117599489 NA coding upstream 148421 1411131 ~ 1411615 (-)
LOC117599435 NA coding upstream 1108914 2371624 ~ 2373304 (-)
LOC117599532 NA non-coding downstream 19738 1241367 ~ 1241904 (-)
G275393 NA non-coding downstream 112878 1145605 ~ 1148764 (-)
LOC117599494 NA non-coding downstream 129073 1132088 ~ 1132569 (-)
LOC117599477 LOC108279477 non-coding downstream 359802 900773 ~ 901840 (-)
LOC117599491 NA non-coding downstream 383388 877038 ~ 878254 (-)
LOC117599498 NA non-coding upstream 29455 1292165 ~ 1293976 (-)
G275408 NA non-coding upstream 123842 1386552 ~ 1433883 (-)
G275369 LOC108261400,LOC108279477,LOC108261423,LOC108262466,LOC108261705,LOC108261384,LOC108261555,LOC108261687,LOC108261611 non-coding upstream 133729 1396439 ~ 1462056 (-)
G275412 NA non-coding upstream 150682 1413392 ~ 1454206 (-)
G275416 LOC108279477,LOC108261384,LOC108261705,LOC108261687,LOC108261555,LOC108262265,LOC108261423,LOC108444129,LOC108412318 non-coding upstream 178529 1441239 ~ 1458199 (-)
LOC117599510 NA other downstream 630255 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 632638 560707 ~ 629004 (-)
LOC117599533 NA other downstream 660613 597414 ~ 601029 (-)
LOC117599529 NA other downstream 674824 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 722344 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 1039 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 19744 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 153195 1415905 ~ 1441145 (-)
G275420 NA other upstream 203149 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 325060 1587770 ~ 1627263 (-)

Expression


Co-expression Network