LOC117599477 (LOC108279477)


Basic Information

Item Value
gene id LOC117599477
gene name LOC108279477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 900773 ~ 901840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579889.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGTCCGAGAACTATGACGATGCAGTTACCAcggaaacaaacccaaacatcatcacagacagtccagaagattatgatgatgtcatcactgaggaa
>XR_004579890.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcagaagtcagttatactgacagAGGACGTGTCCGAGAACTATGACGATGCAGTTACCAcggaaacaaacccaaacatcatcacagtagacagtccagaagattatgatgatgtcatcactgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579889.1 True 292 lncRNA 0.45 5 900773 901840
XR_004579890.1 False 292 lncRNA 0.45 5 900776 901840

Neighbor

gene id symbol gene type direction distance location
LOC113543469 LOC108279491,LOC108262260 coding downstream 206290 686036 ~ 694483 (-)
LOC117595727 LOC108262260 coding downstream 217698 663725 ~ 683075 (-)
LOC117599469 LOC108262260 coding downstream 330762 481574 ~ 570011 (-)
LOC117599468 LOC108262260 coding downstream 425558 422513 ~ 475215 (-)
LOC117599422 LOC108279481,LOC108262260,LOC108279495 coding downstream 506520 376457 ~ 394253 (-)
LOC117599425 LOC108261705,LOC108261555,LOC108261423,LOC108261687,LOC108279477,LOC108261384,LOC108262265 coding upstream 3407 905247 ~ 906730 (-)
LOC117599426 LOC108262466,LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108261400 coding upstream 5390 907230 ~ 907847 (-)
LOC117599470 LOC107667668 coding upstream 273470 1175310 ~ 1177234 (-)
LOC117599427 LOC108261400,LOC108261611,LOC108262466 coding upstream 340298 1242138 ~ 1255186 (-)
LOC117599430 LOC108279477,LOC108261384,LOC108261932 coding upstream 464271 1366111 ~ 1376319 (-)
LOC117599491 NA non-coding downstream 22519 877038 ~ 878254 (-)
LOC117599484 NA non-coding downstream 30298 869990 ~ 870475 (-)
LOC117599512 LOC108261384,LOC108279477,LOC108261687,LOC108261932 non-coding downstream 53792 845933 ~ 846981 (-)
LOC117599493 NA non-coding downstream 59505 840628 ~ 841268 (-)
G275203 NA non-coding downstream 115920 758942 ~ 784853 (-)
G275382 LOC108261611,LOC108261401,LOC108444127,LOC108444122 non-coding upstream 195305 1097145 ~ 1313535 (-)
LOC117599494 NA non-coding upstream 230248 1132088 ~ 1132569 (-)
G275393 NA non-coding upstream 243765 1145605 ~ 1148764 (-)
LOC117599532 NA non-coding upstream 339527 1241367 ~ 1241904 (-)
LOC117599476 LOC108279477 non-coding upstream 359802 1261642 ~ 1262710 (-)
LOC117599510 NA other downstream 269386 629064 ~ 631387 (-)
LOC117599466 LOC108262260,LOC108279495,LOC108279491 other downstream 271769 560707 ~ 629004 (-)
LOC117599533 NA other downstream 299744 597414 ~ 601029 (-)
LOC117599529 NA other downstream 313955 583198 ~ 586818 (-)
G275152 LOC108261384,LOC108261611,LOC108279477,LOC108262118,LOC108261705,LOC108262466 other downstream 361475 536446 ~ 539298 (-)
LOC117599428 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other upstream 361909 1263749 ~ 1297899 (-)
LOC117599495 NA other upstream 380614 1282454 ~ 1282934 (-)
LOC117599432 LOC108262265,LOC108261610,LOC108261705,LOC108261932,LOC108261384,LOC108279477,LOC108261423,LOC108262337,LOC108261515,LOC108261554 other upstream 514065 1415905 ~ 1441145 (-)
G275420 NA other upstream 564019 1465859 ~ 1577516 (-)
LOC117599486 LOC108279477 other upstream 685930 1587770 ~ 1627263 (-)

Expression


Co-expression Network