LOC117599488


Basic Information

Item Value
gene id LOC117599488
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2543147 ~ 2543631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579901.1
agaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagctgagaattatgatgacgccattacagctgatcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579901.1 True 172 ncRNA 0.47 3 2543147 2543631

Neighbor

gene id symbol gene type direction distance location
LOC117599490 NA coding downstream 36053 2506587 ~ 2507094 (-)
LOC117599505 NA coding downstream 88066 2454252 ~ 2455081 (-)
LOC117599531 NA coding downstream 114206 2428508 ~ 2428941 (-)
LOC117599436 LOC108261705,LOC108279477,LOC108261384,LOC108261423,LOC108261610,LOC108261555,LOC108261687 coding downstream 127954 2412542 ~ 2415193 (-)
LOC117599527 NA coding downstream 161813 2379889 ~ 2381334 (-)
LOC117599438 NA coding upstream 85034 2628665 ~ 2630328 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding upstream 120766 2664397 ~ 2667515 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding upstream 124724 2668355 ~ 2669336 (-)
LOC117599441 LOC108261611 coding upstream 128390 2672021 ~ 2678032 (-)
pawr pawr coding upstream 661657 3205288 ~ 3246996 (-)
LOC117599514 LOC108261932,LOC108261384,LOC108279477 non-coding downstream 83035 2459061 ~ 2460112 (-)
LOC117599518 NA non-coding downstream 84306 2457641 ~ 2458841 (-)
G275520 LOC108261384,LOC108262118,LOC108279477,LOC108261705,LOC108261400,LOC108261611,LOC108261423,LOC108444125,LOC108415949 non-coding downstream 106080 2436635 ~ 2437067 (-)
LOC117599475 LOC108279477 non-coding downstream 133043 2377505 ~ 2410104 (-)
G275536 LOC108261384,LOC108261611,LOC108262118,LOC108279477 non-coding upstream 88795 2632426 ~ 2709379 (-)
G275815 NA non-coding upstream 291069 2834700 ~ 2845904 (-)
G275891 NA non-coding upstream 436206 2979837 ~ 2981862 (-)
G276021 NA non-coding upstream 674088 3217719 ~ 3221204 (-)
G276022 NA non-coding upstream 674558 3218189 ~ 3219050 (-)
G275484 LOC108261400,LOC108261705,LOC108279477,LOC108261423,LOC108261611,LOC108262118,LOC108261384,LOC108262466,LOC108261687,LOC108261555 other downstream 431199 2089064 ~ 2111948 (-)
G275481 LOC108261611,LOC108261400,LOC108261743,LOC108262649 other downstream 474018 2065674 ~ 2069129 (-)
G275480 LOC108261384,LOC108262358,LOC108261705,LOC108261423,LOC108279477,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 481027 2061487 ~ 2062120 (-)
G275475 LOC108261705,LOC108261423,LOC108279477,LOC108261384,LOC108261555,LOC108261687,LOC108262265,LOC108261610 other downstream 503085 2038235 ~ 2040062 (-)
LOC117599486 LOC108279477 other downstream 915884 1587770 ~ 1627263 (-)
G275981 NA other upstream 598903 3142534 ~ 3201297 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other upstream 682964 3226595 ~ 3335017 (-)
rps16 rps16 other upstream 755626 3299257 ~ 3384923 (-)
lin7a lin7a other upstream 886559 3430190 ~ 3494016 (-)
G276075 NA other upstream 993366 3536997 ~ 3538743 (-)

Expression


Co-expression Network